HsaALTD1005164-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000080493 | SLC4A4
Description
solute carrier family 4 member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
Coordinates
chr4:71357010-71397653:+
Coord C1 exon
chr4:71357010-71357160
Coord A exon
chr4:71357161-71357187
Coord C2 exon
chr4:71397577-71397653
Length
27 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
GTTTACTTGTGTTTTTCCAGGTA
3' ss Score
10.6
Exon sequences
Seq C1 exon
ATGATTGTTGACCATCAGATTGAGACAGGCCTATTGAAACCTGAACTTAAGGATAAGGTGACCTATACTTTGCTCCGGAAGCACCGGCATCAAACCAAGAAATCCAACCTTCGGTCCCTGGCTGACATTGGGAAGACAGTCTCCAGTGCAA
Seq A exon
GTAGGATGTTTACCAACCCTGATAATG
Seq C2 exon
GTAGCCCAGCCATGACCCATAGGAATCTGACTTCCTCCAGTCTGAATGACATTTCTGATAAACCGGAGAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080493-28-32,29-32-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.215 A=NA C2=0.846
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(23.8=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(16.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACCTATACTTTGCTCCGG
R:
CTATGGGTCATGGCTGGGCTA
Band lengths:
117-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains