GgaALTD0004663-2/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000011604 | SLC4A4
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
Coordinates
chr4:49705075-49716192:+
Coord C1 exon
chr4:49705075-49705227
Coord A exon
chr4:49705228-49705254
Coord C2 exon
chr4:49716116-49716192
Length
27 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
TATTGGCATTGTTCTTACAGGCA
3' ss Score
7.99
Exon sequences
Seq C1 exon
AAATGATTGTCGACAATCAGATTGAGACAGGGCTCTTGAAGGCAGACATGAAGGACAAAGTCACCTACACGCTGCTCAGGAAGCACCGGCACCAGACCAAGAAGTCCAACCTGCGCTCTCTGGCAGACATTGGAAAGACCGTCTCCAGTGCAA
Seq A exon
GTAGGATGTTTACCAACCCCGATAATG
Seq C2 exon
GCAGTCCAGCCATGACTCACAGAAATCTGACTTCCACCAGTCTGAATGACATCTCTGACAAGCCTGAGAAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604-15-12,16-12,17-12-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=NA C2=0.744
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(23.8=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGTCACCTACACGCTGCT
R:
TCTGTGAGTCATGGCTGGACT
Band lengths:
121-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]