GgaEX0017473 @ galGal4
Exon Skipping
Gene
ENSGALG00000011604 | SLC4A4
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
Coordinates
chr4:49705075-49716192:+
Coord C1 exon
chr4:49705075-49705254
Coord A exon
chr4:49711069-49711164
Coord C2 exon
chr4:49716116-49716192
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCCTGCTTGCACCACAAAAGCAC
3' ss Score
-0.62
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAATGATTGTCGACAATCAGATTGAGACAGGGCTCTTGAAGGCAGACATGAAGGACAAAGTCACCTACACGCTGCTCAGGAAGCACCGGCACCAGACCAAGAAGTCCAACCTGCGCTCTCTGGCAGACATTGGAAAGACCGTCTCCAGTGCAAGTAGGATGTTTACCAACCCCGATAATG
Seq A exon
CACGCAGCCCACTCGAGAGCTCCGTGCCCTGCCTAGCGACACGCACGCTGGATGATGAAATCCAAGTGCAGCGCAGCCCCAGCGTGGGATGGCTCA
Seq C2 exon
GCAGTCCAGCCATGACTCACAGAAATCTGACTTCCACCAGTCTGAATGACATCTCTGACAAGCCTGAGAAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.213 A=0.182 C2=0.744
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(23.8=100)
A:
PF075658=Band_3_cyto=FE(11.3=100)
C2:
PF075658=Band_3_cyto=FE(9.9=100)
Main Inclusion Isoform:
ENSGALT00000018948fB2057
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGACAGGGCTCTTGAAGG
R:
TCTGTGAGTCATGGCTGGACT
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]