GgaEX0017473 @ galGal3
Exon Skipping
Gene
ENSGALG00000011604 | SLC4A4
Description
NA
Coordinates
chr4:51791666-51802783:+
Coord C1 exon
chr4:51791666-51791845
Coord A exon
chr4:51797660-51797755
Coord C2 exon
chr4:51802707-51802783
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCCTGCTTGCACCACAAAAGCAC
3' ss Score
-0.62
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAATGATTGTCGACAATCAGATTGAGACAGGGCTCTTGAAGGCAGACATGAAGGACAAAGTCACCTACACGCTGCTCAGGAAGCACCGGCACCAGACCAAGAAGTCCAACCTGCGCTCTCTGGCAGACATTGGAAAGACCGTCTCCAGTGCAAGTAGGATGTTTACCAACCCCGATAATG
Seq A exon
CACGCAGCCCACTCGAGAGCTCCGTGCCCTGCCTAGCGACACGCACGCTGGATGATGAAATCCAAGTGCAGCGCAGCCCCAGCGTGGGATGGCTCA
Seq C2 exon
GCAGTCCAGCCATGACTCACAGAAATCTGACTTCCACCAGTCTGAATGACATCTCTGACAAGCCTGAGAAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604-'10-7,'10-6,11-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.213 A=0.182 C2=0.744
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(23.8=100)
A:
PF075658=Band_3_cyto=FE(11.3=100)
C2:
PF075658=Band_3_cyto=FE(9.9=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGACAGGGCTCTTGAAGG
R:
TCTGTGAGTCATGGCTGGACT
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event