MmuEX0043408 @ mm9
Exon Skipping
Gene
ENSMUSG00000060961 | Slc4a4
Description
solute carrier family 4 (anion exchanger), member 4 [Source:MGI Symbol;Acc:MGI:1927555]
Coordinates
chr5:89475238-89513743:+
Coord C1 exon
chr5:89475238-89475417
Coord A exon
chr5:89486974-89487069
Coord C2 exon
chr5:89513667-89513743
Length
96 bp
Sequences
Splice sites
3' ss Seq
GCTGCTTCTGGCGCTAAAAGCCC
3' ss Score
1.59
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AGATGATTGCAGACCACCAGATCGAGACAGGCCTACTGAAGCCTGACCTGAAGGATAAGGTCACCTATACTCTGCTCCGGAAACATCGACATCAAACCAAGAAATCCAACCTTCGGTCCCTGGCTGACATTGGGAAGACTGTCTCCAGTGCAAGTAGGATGTTTAGCAACCCTGATAATG
Seq A exon
CCCGAAGCCCGCTTGAGAACTCAGTGCCCTGCCTAGCAAATCGCACCTTGGACGATGACCCCCGAGTGCGGCGCACTCCCAGCGTGGGATGGCTCA
Seq C2 exon
GCAGCCCAGCCATGACCCACAGGAATCTGACATCCTCCAGTCTCAATGACATTTCTGATAAACCAGAGAAGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060961-'10-12,'10-11,11-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.254 A=0.818 C2=0.853
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(21.0=100)
A:
PF075658=Band_3_cyto=FE(11.3=100)
C2:
PF075658=Band_3_cyto=FE(10.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAGCCTGACCTGAAGGA
R:
GATTCCTGTGGGTCATGGCTG
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types