HsaEX1037602 @ hg38
Exon Skipping
Gene
ENSG00000080493 | SLC4A4
Description
solute carrier family 4 member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
Coordinates
chr4:71357008-71397653:+
Coord C1 exon
chr4:71357008-71357187
Coord A exon
chr4:71369043-71369138
Coord C2 exon
chr4:71397577-71397653
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTTCTGACACTAAAGTGC
3' ss Score
-0.15
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
AGATGATTGTTGACCATCAGATTGAGACAGGCCTATTGAAACCTGAACTTAAGGATAAGGTGACCTATACTTTGCTCCGGAAGCACCGGCATCAAACCAAGAAATCCAACCTTCGGTCCCTGGCTGACATTGGGAAGACAGTCTCCAGTGCAAGTAGGATGTTTACCAACCCTGATAATG
Seq A exon
TGCGCAGCCCGCTTGAGAACTCAGTGCCCTGCCTAGCAACCCGCACCTTGGATGATGACCCCCGAGTGCGGCGCACTCCCAGCGTGGGATGGCTAA
Seq C2 exon
GTAGCCCAGCCATGACCCATAGGAATCTGACTTCCTCCAGTCTGAATGACATTTCTGATAAACCGGAGAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080493_MULTIEX1-7/22=6-8
Average complexity
S
Mappability confidence:
82%=82=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.215 A=0.606 C2=0.846
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(23.8=100)
A:
PF075658=Band_3_cyto=FE(11.3=100)
C2:
PF075658=Band_3_cyto=FE(16.9=100)
Main Inclusion Isoform:
ENST00000264485fB26137
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGACAGGCCTATTGAAACCTG
R:
CTATGGGTCATGGCTGGGCTA
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains