RnoEX0082843 @ rn6
Exon Skipping
Gene
ENSRNOG00000003134 | Slc4a4
Description
solute carrier family 4 member 4 [Source:RGD Symbol;Acc:68936]
Coordinates
chr14:20619252-20655494:-
Coord C1 exon
chr14:20655315-20655494
Coord A exon
chr14:20644256-20644351
Coord C2 exon
chr14:20619252-20619328
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTCTGGCACTAAAAGCCC
3' ss Score
2.7
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AGATGATTGCAGACCACCAGATCGAGACAGGCCTCTTGAAGCCCGACCTCAAGGATAAGGTCACCTATACGCTGCTGCGGAAACACCGACATCAAACCAAGAAATCCAACCTTCGGTCCCTGGCTGACATTGGGAAGACAGTCTCCAGTGCAAGTAGGATGTTCAGCAACCCTGATAACG
Seq A exon
CCCGCAGCCCGCTTGAGAACTCAGTGCCCTGCCTAGCAAATCGCACCTTGGACGATGACCCCCGAGTGCGGCGCACTCCCAGCGTGGGATGGCTCA
Seq C2 exon
GTAGCCCAGCTATGACCCACAGGAATCTGACATCCTCCAGTCTCAATGACATTTCTGATAAACCAGAGAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003134_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.249 A=0.818 C2=0.827
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(23.8=100)
A:
PF075658=Band_3_cyto=FE(11.3=100)
C2:
PF075658=Band_3_cyto=FE(9.9=100)
Main Inclusion Isoform:
ENSRNOT00000004391fB13733
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGAAGCCCGACCTCAAG
R:
CTGTGGGTCATAGCTGGGCTA
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]