BtaEX0033336 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002348 | SLC4A4
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 4 (SLC4A4), mRNA. [Source:RefSeq mRNA;Acc:NM_174605]
Coordinates
chr6:88354378-88396527:+
Coord C1 exon
chr6:88354378-88354557
Coord A exon
chr6:88366546-88366641
Coord C2 exon
chr6:88396451-88396527
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTTCTGGCACTAAAGCCC
3' ss Score
0.75
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
AGATGATTGTTGACCATCAGATTGAAACAGGCCTATTGAAACCTGACCTTAAGGATAAGGTGACCTATACTTTGCTCCGGAAGCACCGGCATCAAACCAAGAAATCCAACCTTCGATCCCTGGCTGACATTGGGAAGACTGTCTCCAGTGCAAGTAGGATGTTTACCAACCCTGATAATG
Seq A exon
CCCGCAGCCCGCTTGAGAACTCAGTGCCCTGCCTAGCAACCCGCACCTTGGACGATGACCCCCGAGTGCGGCGCAGTCCCAGCGTGGGATGGCTAA
Seq C2 exon
GTAGCCCAGCCATGACCCACAGGAATCTGACTTCTTCCAGCCTGAATGACATTTCTGATAAACCAGAGAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002348_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.758 C2=0.808
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(23.8=100)
A:
PF075658=Band_3_cyto=FE(11.3=100)
C2:
PF075658=Band_3_cyto=FE(9.9=100)
Main Inclusion Isoform:
ENSBTAT00000003032fB6518
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCCTATTGAAACCTGACC
R:
GATTCCTGTGGGTCATGGCTG
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development