MmuEX0043408 @ mm10
Exon Skipping
Gene
ENSMUSG00000060961 | Slc4a4
Description
solute carrier family 4 (anion exchanger), member 4 [Source:MGI Symbol;Acc:MGI:1927555]
Coordinates
chr5:89046213-89084718:+
Coord C1 exon
chr5:89046213-89046392
Coord A exon
chr5:89057949-89058044
Coord C2 exon
chr5:89084642-89084718
Length
96 bp
Sequences
Splice sites
3' ss Seq
GCTGCTTCTGGCGCTAAAAGCCC
3' ss Score
1.59
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AGATGATTGCAGACCACCAGATCGAGACAGGCCTACTGAAGCCTGACCTGAAGGATAAGGTCACCTATACTCTGCTCCGGAAACATCGACATCAAACCAAGAAATCCAACCTTCGGTCCCTGGCTGACATTGGGAAGACTGTCTCCAGTGCAAGTAGGATGTTTAGCAACCCTGATAATG
Seq A exon
CCCGAAGCCCGCTTGAGAACTCAGTGCCCTGCCTAGCAAATCGCACCTTGGACGATGACCCCCGAGTGCGGCGCACTCCCAGCGTGGGATGGCTCA
Seq C2 exon
GCAGCCCAGCCATGACCCACAGGAATCTGACATCCTCCAGTCTCAATGACATTTCTGATAAACCAGAGAAGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060961_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.240 A=0.818 C2=0.851
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(21.0=100)
A:
PF075658=Band_3_cyto=FE(11.3=100)
C2:
PF075658=Band_3_cyto=FE(10.3=100)
Main Inclusion Isoform:
ENSMUST00000148750fB3786
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAGCCTGACCTGAAGGA
R:
GATTCCTGTGGGTCATGGCTG
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types