DreEX0073065 @ danRer10
Exon Skipping
Gene
ENSDARG00000013730 | slc4a4a
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4a [Source:ZFIN;Acc:ZDB-GENE-060526-274]
Coordinates
chr5:45205847-45211334:-
Coord C1 exon
chr5:45211178-45211334
Coord A exon
chr5:45208647-45208742
Coord C2 exon
chr5:45205847-45205923
Length
96 bp
Sequences
Splice sites
3' ss Seq
GCTGCACTCGTCACTAAAAGCAC
3' ss Score
1.03
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
AAATGATCACTGACAGTCAGATTGAGAGCGGCCTCTTGAAAGCTGACCTGAAAGAAAAGGTCATGTACACCTTGCTGAGGAAGCATCGCCACCAGACCAAGAAGTCCAATCTTCGCTCCTTAGCTGACATTGGCAAAACGGTCTCCAGTGCAAGTAG
Seq A exon
CACGTAATCCACTTGAGAGTTCAGTGCCTTGTCTAACGACTCGCACCTCAGAGGAGGTTTTGCGAGTCCCTGGAAGTCCAAGCATGGGATGGCCTA
Seq C2 exon
GCAGCCCAACCACTGCACATCGCAACCTGACATCAAGCAGCCTGAACGATATCTCAGACAAGCCAGAGAAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013730_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.758 C2=0.904
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(23.8=100)
A:
PF075658=Band_3_cyto=FE(11.3=100)
C2:
PF075658=Band_3_cyto=FE(9.9=100)
Main Inclusion Isoform:
ENSDART00000041503fB6091
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTCTTGAAAGCTGACCTG
R:
TCGTTCAGGCTGCTTGATGTC
Band lengths:
177-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]