GgaALTD0004989-3/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000012418 | KYNU
Description
kynureninase [Source:HGNC Symbol;Acc:HGNC:6469]
Coordinates
chr7:32143830-32148108:+
Coord C1 exon
chr7:32143830-32143930
Coord A exon
chr7:32143931-32144216
Coord C2 exon
chr7:32147919-32148108
Length
286 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
GTGGCACTTCTCATTTTAAGGTG
3' ss Score
7.72
Exon sequences
Seq C1 exon
GTTTTGCCAGCACAGACCTGTTTTGCTAACTTGCATGCTTATGTCAGTGCATAATCCCAGTACTCAGAGTACACTCTCAGGGTCACCTGAAAAACTCAAAG
Seq A exon
GTCTGTGGGCTGAGCCACGTTTAGCAACCTGTTGGATAGCCATTGGAGGGCAGAAAGTGCAGGACCTGCTCTTTTTTTCCTCTGATAAACTCTCCCGTGATGCTATTGACACAGCTTTTAAGTAGGGATTCGTTGTATGCCCTTGTCAGCACTGTCTTGGGTAGAAAGACTGTGAGTAAAAACTCGGAATGCTTGGAGAGAGTATTTAAAGGGGCTGAGGGACTGTATGGTTCTTTTATTGAAGGCATCAGTACAAACATGGACAGAGTAGAACCATAAAAATACT
Seq C2 exon
GTGAAATTGAATGACCTGAAAATGGATCCATCTTCTACTGCGCTACCAGCAACCATTATAGAGCAAGCTGCCTTGCAGCTAGGATGCAGCCCAACAGACAAGAAACTTGCTTTTCACTTAGATGAAGAAGATGAGTTAAAGAATCTTCGTGAATGTTTCTATATCCCGAAAGTCAAGGATCTGCCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012418-2-1,3-1,4-1-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCCAGCACAGACCTGTTT
R:
GGCAGATCCTTGACTTTCGGG
Band lengths:
284-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]