GgaEX1032716 @ galGal4
Exon Skipping
Gene
ENSGALG00000012418 | KYNU
Description
kynureninase [Source:HGNC Symbol;Acc:HGNC:6469]
Coordinates
chr7:32144116-32148108:+
Coord C1 exon
chr7:32144116-32144216
Coord A exon
chr7:32146431-32146651
Coord C2 exon
chr7:32147919-32148108
Length
221 bp
Sequences
Splice sites
3' ss Seq
TACCATGTCTGTGATCCTAGCTT
3' ss Score
3.29
5' ss Seq
TTGGTGTGT
5' ss Score
3.29
Exon sequences
Seq C1 exon
GGAATGCTTGGAGAGAGTATTTAAAGGGGCTGAGGGACTGTATGGTTCTTTTATTGAAGGCATCAGTACAAACATGGACAGAGTAGAACCATAAAAATACT
Seq A exon
CTTGCTTTTCTAGATATTTTGCATCTATTGGAGGAAATAAAGATCTCTGAACAGTATCCTCTGATGAATGCGAAGAGGGTCCTCTTCTGACCCATGGAAGACTGCAGAAGTTACCAATACCACAGCAGAGGAACTGGGAAATGCAAGGCCCAGGATCTGCTGCACAGCTGTGGAGGAGCTGGGAAGCTGTTCCCACTGTGTCTTCAGGAGGTGATCAGTTG
Seq C2 exon
GTGAAATTGAATGACCTGAAAATGGATCCATCTTCTACTGCGCTACCAGCAACCATTATAGAGCAAGCTGCCTTGCAGCTAGGATGCAGCCCAACAGACAAGAAACTTGCTTTTCACTTAGATGAAGAAGATGAGTTAAAGAATCTTCGTGAATGTTTCTATATCCCGAAAGTCAAGGATCTGCCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012418-'4-1,'4-0,5-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000020299fB8855
Main Skipping Isoform:
ENSGALT00000020299fB2230
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTTGGAGAGAGTATTTAAAGGGG
R:
AGGCAGATCCTTGACTTTCGG
Band lengths:
284-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]