GgaEX1032714 @ galGal4
Exon Skipping
Gene
ENSGALG00000012418 | KYNU
Description
kynureninase [Source:HGNC Symbol;Acc:HGNC:6469]
Coordinates
chr7:32143236-32152947:+
Coord C1 exon
chr7:32143236-32143336
Coord A exon
chr7:32147919-32148108
Coord C2 exon
chr7:32152827-32152947
Length
190 bp
Sequences
Splice sites
3' ss Seq
GTGGCACTTCTCATTTTAAGGTG
3' ss Score
7.72
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
CTGGCAGAGCAGACACATGACTACGGCTCTTTCCTAACACGCCTCATGCATTTGCACAAGGGTTTCCTCATCCTCTCCAAGGGACGGCTGCCAATTGCAGG
Seq A exon
GTGAAATTGAATGACCTGAAAATGGATCCATCTTCTACTGCGCTACCAGCAACCATTATAGAGCAAGCTGCCTTGCAGCTAGGATGCAGCCCAACAGACAAGAAACTTGCTTTTCACTTAGATGAAGAAGATGAGTTAAAGAATCTTCGTGAATGTTTCTATATCCCGAAAGTCAAGGATCTGCCTCCAA
Seq C2 exon
CTGACCTGACCCTGGTGAATGGAGAGGAGAGCTGCATATACTTTGTTGGGAATTCTCTTGGACTCCAGCCAAAAAAAGTTAAAACTTACCTGGACGAAGAACTGGACAAGTGGGCTCGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012418-'1-2,'1-1,6-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0026614=Aminotran_5=PU(15.6=68.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAGAGCAGACACATGAC
R:
GAGCCCACTTGTCCAGTTCTT
Band lengths:
218-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]