BtaEX0019832 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032277 | KYNU
Description
kynureninase [Source:HGNC Symbol;Acc:HGNC:6469]
Coordinates
chr2:53941984-53964125:-
Coord C1 exon
chr2:53964005-53964125
Coord A exon
chr2:53956566-53956747
Coord C2 exon
chr2:53941984-53942104
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTTTTCAAATGTATTTTTAGAGG
3' ss Score
6.96
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GCAAAAGTGCTTTGACTTTCTCACTCAGAAGTTTAGTCTATATTTGTAAGCTACTTTTGAGAGGTTTCATTTTGCTGAAAAGAGACACTGGGAGCTGTGGACCCCACTGGAATCCTAATAG
Seq A exon
AGGAGAACTTGTAATGGAGCCTTCACCTCTTGAGTTACCAACGGATACATTGCGACGCATCGCATCTGAACTTAGATGTCACCCAACAGATGAGAGAGTTGCTCTCCGCCTCGATGAAGAAGACAAGCTGAGGCACTTCAGGGAGTGTTTTTATATTCCCAAAATGCAGGATCTGCCTCCAA
Seq C2 exon
TTGATTTATCTTTAGTGAATAAGGATGAAGAAGCTATCTATTTCTCGGGAAATTCTCTTGGCCTTCAACCAAAAATGGTTAAAACATACCTGGAAGAGGAACTAGATAAATGGGCCAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032277_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.123 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0026614=Aminotran_5=PU(8.4=68.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAGTGCTTTGACTTTCTCACT
R:
ATTTTGGCCCATTTATCTAGTTCCT
Band lengths:
242-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development