HsaEX6015802 @ hg19
Exon Skipping
Gene
ENSG00000115919 | KYNU
Description
kynureninase [Source:HGNC Symbol;Acc:6469]
Coordinates
chr2:143635067-143676298:+
Coord C1 exon
chr2:143635067-143635305
Coord A exon
chr2:143642918-143643105
Coord C2 exon
chr2:143676178-143676298
Length
188 bp
Sequences
Splice sites
3' ss Seq
GTTTTATTATTCTCTTTCAGTTT
3' ss Score
10.5
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TGGCATTTGAAATGGTGGGCAGGAGCACATGTTGCTTAAATTTCTGACAGTGGCTGGAGATTACCGATTGGTTAGGGGAGAGGAAGTAAAGTAAAATATTTATAAATTCTCCACTGGGTGGAGTCTGAGCAGTTCTTTGAATTTCTCACCCTAAGATCTGGCCTGTACATTTTCAAGGAATTCTTGAGAGGTTCTTGGAGAGATTCTGGGAGCCAAACACTCCATTGGGATCCTAGCTG
Seq A exon
TTTTAGAGAACAACTTGTAATGGAGCCTTCATCTCTTGAGCTGCCGGCTGACACAGTGCAGCGCATTGCGGCTGAACTCAAATGCCACCCAACGGATGAGAGGGTGGCTCTCCACCTAGATGAGGAAGATAAGCTGAGGCACTTCAGGGAGTGCTTTTATATTCCCAAAATACAGGATCTGCCTCCAG
Seq C2 exon
TTGATTTATCATTAGTGAATAAAGATGAAAATGCCATCTATTTCTTGGGAAATTCTCTTGGCCTTCAACCAAAAATGGTTAAAACATATCTTGAAGAAGAACTAGATAAGTGGGCCAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115919-'0-7,'0-4,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.075 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0318510=CaKB=PU(69.6=68.4)
C2:
PF0026614=Aminotran_5=PU(11.9=68.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGATTGGTTAGGGGAGAGGA
R:
TGAAGGCCAAGAGAATTTCCCA
Band lengths:
243-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)