RnoEX0047947 @ rn6
Exon Skipping
Gene
ENSRNOG00000029993 | Kynu
Description
kynureninase [Source:RGD Symbol;Acc:71061]
Coordinates
chr3:28416954-28452273:+
Coord C1 exon
chr3:28416954-28417032
Coord A exon
chr3:28424102-28424276
Coord C2 exon
chr3:28452153-28452273
Length
175 bp
Sequences
Splice sites
3' ss Seq
GCTTCCTTCTTCGATAACAGTTT
3' ss Score
5.85
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GGCTACCTAGGGACAAGGAAATATCAGGCATCCCCTGAAAAGGTACTGGAAACTGAGGACCCTATCTGGATCAAAGCAG
Seq A exon
TTTCTGATGGAGCCCTCGCCTCTTGAGCTACCAGTTGATGCAGTGCGGCGCATCGCGACTGAACTCAATTGTGACCCAACCGATGAGAGGGTGGCTCTCCGCTTGGATGAGGAAGATAAACTGAAGCGTTTTAAGGACTGTTTTTATATCCCCAAAATGCGGGACCTGCCTTCAA
Seq C2 exon
TTGATCTATCTTTAGTGAATGAGGATGATAATGCCATCTATTTCCTGGGAAATTCCCTTGGTCTTCAACCGAAGATGGTTAAAACATACCTGGAGGAAGAGCTAGATAAGTGGGCCAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029993-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.041 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0026614=Aminotran_5=PU(8.3=68.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACCTAGGGACAAGGAAA
R:
GGCCCACTTATCTAGCTCTTCC
Band lengths:
195-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]