MmuEX6101095 @ mm9
Exon Skipping
Gene
ENSMUSG00000026866 | Kynu
Description
kynureninase (L-kynurenine hydrolase) [Source:MGI Symbol;Acc:MGI:1918039]
Coordinates
chr2:43410849-43436986:+
Coord C1 exon
chr2:43410849-43410929
Coord A exon
chr2:43418477-43418658
Coord C2 exon
chr2:43436866-43436986
Length
182 bp
Sequences
Splice sites
3' ss Seq
ACGTTTTACTTCCTTCTTAGATA
3' ss Score
8.88
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
AGTTCTTTGGCTAGCTGGGGACAAAGAAAGATCCAGCATCCTCTGAGAAGGTACTGAAGACTACTGTCTGGATCTGAGCAG
Seq A exon
ATAACAGTTTATGATGGAGCCTTCGCCTCTTGAGCTTCCAGTTGATGCAGTGCGGCGCATCGCGGCTGAACTCAATTGTGACCCAACAGATGAGAGGGTTGCTCTCCGCTTGGATGAGGAAGATAAACTGAGTCATTTTAGGAACTGTTTTTATATTCCCAAAATGCGGGACCTGCCTTCAA
Seq C2 exon
TTGATCTATCTTTAGTGAGTGAGGATGATGATGCCATCTATTTCCTGGGAAATTCCCTTGGCCTTCAACCGAAAATGGTTAGGACATACCTGGAGGAAGAACTAGATAAGTGGGCCAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026866-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0026614=Aminotran_5=PU(11.8=68.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTTTGGCTAGCTGGGGA
R:
ATCTTGGCCCACTTATCTAGTTCT
Band lengths:
202-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: