GgaINT1016508 @ galGal4
Intron Retention
Gene
ENSGALG00000012418 | KYNU
Description
kynureninase [Source:HGNC Symbol;Acc:HGNC:6469]
Coordinates
chr7:32143918-32148108:+
Coord C1 exon
chr7:32143918-32144101
Coord A exon
chr7:32144102-32147918
Coord C2 exon
chr7:32147919-32148108
Length
3817 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
GTGGCACTTCTCATTTTAAGGTG
3' ss Score
7.72
Exon sequences
Seq C1 exon
GAAAAACTCAAAGGTCTGTGGGCTGAGCCACGTTTAGCAACCTGTTGGATAGCCATTGGAGGGCAGAAAGTGCAGGACCTGCTCTTTTTTTCCTCTGATAAACTCTCCCGTGATGCTATTGACACAGCTTTTAAGTAGGGATTCGTTGTATGCCCTTGTCAGCACTGTCTTGGGTAGAAAGACT
Seq A exon
GTGAGTAAAAACTCGGAATGCTTGGAGAGAGTATTTAAAGGGGCTGAGGGACTGTATGGTTCTTTTATTGAAGGCATCAGTACAAACATGGACAGAGTAGAACCATAAAAATACTGTAAGTGCATCTAAAAATAGGAGAGATTGTTCTTTTAATTAAGCCTAATGGACCTTCGTGTGTGAGTTTGATAGGATAGCTTGCTAATAGTCATGCTTATTTCTCTTTAGTCAGTAAGTTATGCATAAAGGACTAAAGAGAAATAATCACATCCATGTCATTTGCCTGACTTGCTCATCCATTCTTTTATGTTTTTTCTGCTGTCTTCCATGGGTTAAAAATCACAGATGAAATGTGTTGGTACTTGTGCTGATGAAACATGTAATGACTTTTCTTAATTTTGGTTCCATGTGCTCTTTTTGAAAGCTAAATGCTGCCAGCACTCACTGGTGAGTTCTTTACATTGAATCCCTGCATACACCAAGAGGGTGGGAGAAGTAAGGGCTGAAGTAGAGAGTTCCTTGGGGGGGAGAAACTAGTGAGCATTAAGAAGATATGGGGAACAGAAGGAAAAGCTGCAGAAGAATTAAATCTTATGGTGGGGGAAGTAGTGAAGATGTCAAAAGAGCAGAGTCAAAAAGAAAAAGAAATGCTGACTTCATGTCCTCTTTCTATTAAGCCAAGAGCACCAGGAGATTTCAAGGAAATGAGGAAAATGCTTGACATTTTTATTATACTTCAGAGAAGGTGGTAGAGGCAAGGTTTTTCTTAGTATTGTTTGTTTATACTTCAAGTCACATGAAAAAATTCCTGATAAGGAGACATGGGGAAGTGGGAAGAATATTTAGCATTGATTTTAATTTGAAGAGGATGCAGAATATAATTCTCAGTTAAGTGAAGATGGTTGGGTGGAATAAAGCTGTACTGTTTTTGATAACAAATTTTATCTGCATGTAGAAATAATTCATAAATTACTGTGAAATAACTACATGGTACTCTGTTCTACAGCAATTAGGAAATGCTCTAAAGTGTATTAAAAAAAAAAGGGAGTTTTCTCTGAAGCCTAATTCTCAACTGAAGAACAAAAGTGCTTTCTTATTCTGGTCTCAGAGTTTGATTCTGGGATTTCATTCCTCAGTAGGATTTTGATTGATTGATTTTTATTTTAGTAGTTTTATCTTATTTCATAATGTTTGTATTAAATCAGATACCTCAGAGCACTTAATCATTTTTAGCTTCTAGATCTTTGCATTGGATATTATATTTGCTGTCAAAATTTAATATAAGAATTATAATAAACAAAGCTCATTGATCAGATGCAGCAAACTACAGCAATGACAGGGAACCGGAAGCCTGATCCAGAAATTTGTCTCTAACAAAGAGACACCTATTGACTTCATTGGGTTTTGGGTCAGCCTCAGTTGGATACAAAACCCATTTAGGCTTTCCACACAGGTCAGTGGATGACCTGGATTATGATAGCTATTAATCTACTGTAATAACACTGTGTCCTTATAATGAAATGGGGAAGAGAGACAGATGGAAGGATGCTGTCATGTCTTTGTGTGCTGGGAAAACAAAGAATCTGCAGCCCAGATGAGAGGGATCTGATGTGTGAAAAACCAAACTATCCTTCAAACACCCTTATCCAACTGCTGGTCATAAATTGCAATGGAATTAGCTGGCATTGCCTGCATGAGCTAACTAATGGAAGCTATATTTGTTGTAGTATCTTATCCAGGAGAGAAGGTGGGGATGGCAATAATGTTCTATGTTACCCCTCCTATAGACTTGTTCCGTTATACTCAGCTCCCTGCCAAGTACACCTGCTCTGCTAGGAAAAGAGCCTCAGCTGGATCATCCATTGAGTTCTTAATTCAGGAGCTATGATCATGAACAGCAAACAAATCTAGGCATTAATGAGAGGGAAGGGAAGCCTGCATGTAGGGAAGGCTGCAGACGGCTGCTTTTATCTGGAATGAGGCAGTAAGGAAGAAGGTATTTCCATCTTCAAGAATTTTGCTTCCTTAGTGTGCACTAAATCTCTATTAAAAAAATAATACAATTATATTTTGCTTTCGTGTGTACTGGACATTGTTTCCTAATGATTGCAGGATTAAGGCATCCATGATAGCACTGCAAATAAAAGAAATAAGTCTTTGGAACTAGTTTTACTTTCCAAGTGCTGACTCCTGCATTGCTTGAAAATAGTGCTGGTTAACCCCATGCCGTCTTAAAATTTATAAGTGGGAGAAGTGTAAACATACTTCAGTGTCTTTATCCAATAACAAGGTGCTGGTACAGGTGGTGGCCATACCATGTCTGTGATCCTAGCTTGCTTTTCTAGATATTTTGCATCTATTGGAGGAAATAAAGATCTCTGAACAGTATCCTCTGATGAATGCGAAGAGGGTCCTCTTCTGACCCATGGAAGACTGCAGAAGTTACCAATACCACAGCAGAGGAACTGGGAAATGCAAGGCCCAGGATCTGCTGCACAGCTGTGGAGGAGCTGGGAAGCTGTTCCCACTGTGTCTTCAGGAGGTGATCAGTTGGTGTGTACTGTATTTCATCCATGTCAGCTGCTCCTTTAGCATTGCACCCAGCAACTCATCACATTGTAGCTGTTCACCTCCTAGAAGCCATAGCAAACACTGACAAAGAGGATGCTTGAATACCTTTCTATCACTTTTCCAGTTTTCCTCTCCTTTCTAGTAGCTAAAAAGTAATCAGGATGACTGGGTAAGGATGATAAATTTGTTGCTGATGAGGAAGTGTGAACAACCCATGTTCAACAATTGGTTATCTCCAAGGGCTTCTTAGAGAAAGTGAATATTATCAGTTAAATGAAAACTTTTTTTTTTCCACTCAGTGTTGCTGAGACGGGGGGCGGGGGGGGGGGGGGGAAGATACTGTATAATGTATCAAGTCTGGAGAGGAACATTCTGAACGTAAATCAAATGATTAAACCAGATAACTGGCATCACGCTGGCCATTTACCTAGTGTAAAGAGGCTTGAATTAATTGGCACTAATGGAGTTGTTCTATTCAGGGGGTTATATTGAAATACCCACAATTGTCCTTCCTGTATGTGGTGATGAAGCTCTTCTGGATGATGTTCAGGGGCTGGCATTAAAACTTAATTTAAAGAAAAAAGCAGTAACAAACCCTGCTAATTTACACTCTTGTGCTTACTGCTTGACTTGGGCTTTGTCCCTTTTTTGGAACAAAGGAGATAAGAGCATAGGATATCTGATGTAGCCAGGCTTAAAATATTTTAAGGTCGTGATTTTGAAAGCGTCTTATGATGTCTTTTTCATCTGTACATTTCCCGCTCTACCCCTGTACATTAGCGCAAAGGGCCGCTCCTATTTGTCAAGGTAGAAAAGCTGAGAGAGTTTGAGCATTGCAGCCTGGAAACAACTTTCAGTGTAGCTATGCACCTGCTGTCTTTAGGAGCACAGACTGTAATAACAACAATTCTGCCTCTGGTTTACAGATCCAGAGACGGTGGGTGATGCTTCAGTGTTTGTAACTGCTGTTGGTCTGATGGAAGAACTGGAAGGCTGCTGATATAGCTTAAAAAGGGAACAGCAATGTATCTATGGAGCTGTGGGGGAAAAAGCCTTAAAAACAGAAATACACTGCTATGTATTTACTTGAATTGATCAATTTTGCCATTATTCATTCACATTTCGCTGCTTAAAAGCTTTAAATCAAGAAAATGTGGGGCCTTGAATGCTGCAGCTTTGGTGGCTGCTTATCAACCACTTGTGTATATACATTCTGTAGAAGTTAAACTGTGGCACTTCTCATTTTAAG
Seq C2 exon
GTGAAATTGAATGACCTGAAAATGGATCCATCTTCTACTGCGCTACCAGCAACCATTATAGAGCAAGCTGCCTTGCAGCTAGGATGCAGCCCAACAGACAAGAAACTTGCTTTTCACTTAGATGAAGAAGATGAGTTAAAGAATCTTCGTGAATGTTTCTATATCCCGAAAGTCAAGGATCTGCCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012418:ENSGALT00000020299:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]