RnoINT0081201 @ rn6
Intron Retention
Gene
ENSRNOG00000029993 | Kynu
Description
kynureninase [Source:RGD Symbol;Acc:71061]
Coordinates
chr3:28416954-28424276:+
Coord C1 exon
chr3:28416954-28417032
Coord A exon
chr3:28417033-28424101
Coord C2 exon
chr3:28424102-28424276
Length
7069 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GCTTCCTTCTTCGATAACAGTTT
3' ss Score
5.85
Exon sequences
Seq C1 exon
GGCTACCTAGGGACAAGGAAATATCAGGCATCCCCTGAAAAGGTACTGGAAACTGAGGACCCTATCTGGATCAAAGCAG
Seq A exon
GTAAGCAAAGAGCAGGCCAAGGCACAGCTCTGAGCCTAAACAGACATTCACTTTCCTTGTTCTTTTCCAAACGGAACTTCTCTCTACTTAACGGTGCAGTCCTTTGGGGATTTCTTTTCCTGCTTTCTTCTTTCTGTATAAATTATCTTCATAAACAAAACCGGCATGGCCTCCCTTAAAGCCTGCACCTCTAAACCCAGGATAGAGAAAGCGGATGAAGTTGCAGTCCCGGCAGGTTAGCCCGGCACTCATTGCAGTTTTAAATGCTCGGGTAGAACAAGCCTAGGTAAAGAAAGTCCATGTTGAAAGGAGCTTTCTGGTTTCTGGTTTGTCCTGTGCTGCTATTCGTCACATTAACGTTTAGAGAAGTGAAAGTGTATTTTCTTGACGGGAGTTTCTTCCCCTTTTATTTTCTAGAGCATTTTGCCTAAGCGTATACAGAATTTTTTTTTTGTATTTGGTAAATGGTTTTTTCAGTTCCCTGTGGGTTTGCTACTTAAGGAATGTGGGAACAAACTCCAGGATCTTGTACTGCTCAGCTAGGCTGGTTGTACCCGTGATGTCACCCAATTCTCAATGACAGTCTTACAGAAGCATGCTTTGCACACCTGTATATAAATTTTTTACTTCCCCTGATGAAGTGTGGCATTTTACGAATGTATCTTTACCAGCTTCTAAACTTTGAACTTGGTATCCCTTGGGAAGGACTCTTTGCTAGGCAAAGATTAACTATTGAGCGCTGGGTCACTAATTGAGCTGGTTGACCTTAGACCCGTAGGGTCAGGGAGAGATCTCTAATTTGTGACTCCTTTATTACCGATGGTCAGCACTTCAGTAAGCACAGCCTTTCACCCATGGAAACGTAGCTACGTAAATAAAACCACAAAGACCAATTTTCAAAATTTCAAGTGCATAATAGGAGAATGAAATCAATTTCCATCAGAACACAGCGATATTTAAAACTCCTATGGAAATACCTCATGAAGGTGACTTGACGCTAACCACAGGCTCCTTTAAAAAAAATCAAATTGAACTTTATTTTATATAACAATGACCAAAGTGGGTTCGGATGACTTGCACCCCAGCATATGACATGTTTGTTTGCCCTTGTAAAAGTAAGCCATGCTCAATACATGAAATATGAAATTTGACAGTTATTATAAGCTAGGAGTTAATGTCTTCATTTTCAAACAAATCATGTCAATTTACTTGCAAATGATTAGTCTAAGTAAGGCGTAAAATGATGTTTTGAAGCACTGATTGTCTTAGCTGGGGGAATGGACACAGAATTAGGCAGCAATTAATAGGCGCTAATCAGTTCTCTCTCGGGGCAAAGGCCTTGAGTAAGCCTTGCAGTCTGCTGGCACTGTGCAGAGGGGTACCCTGGAAGGAAGCACCATTTCAGGGAAGACATCCCTGTACCTACTCCCATCTCCAACGTAACAAGCCCAGAAGTGTAAAGAGCTACACATTTGCGTGAAGAGATTAGATTTTACTATAAAGGCATAAAGGCTTATGCCTGTAACCCCAGGACTTAGGAAGCAGGGGATTCGTGGACTCCAGATAAGCCAGGACTGTATCATGATGCTTTGTCCCCAAGTATTTCTTAAGAGGAAATAAATTCTCCTATAGACCATGCTGCTGTATAGAGTTAATGTGGAATTACAAAAAGAAAACAGAGGAAAGGGAAATAAGCAAAAGCCATTGATTTTAAAAATCAGGAAACAGAATACAAGGAAATAAGAGGTTGCTGTGAACAGGGGTTTTTCTCCTTCTGAGGAGGGGCTTTTCTCCCTGTGAGCTGGGGGTTTTCTCCCTCTGAGCAGGGGGTTTTTCTCTGTGGGTCTGACTACACACCTTCCTTCATAAAAGAGGCCCAGTTTGCTCTGGGCTTTCAGACACACTTGACTGTAAACTTTACCTCGGCCTCAGAGCCCATTGAATGTGTTGTGCAGTCATTGGCCTCCAAGGTAAGTAACCCTAACTCCTCAGTATTCTTACAAGGATGAACTAACTGTTGATGCAAACACACTAACATGTTTCTTGTTTGTTCGTTTTGGGATAGGGTCTTGATACGCAGTCAAGACTCACAATGCGTCAGTCTCTTGCCCAGTACAATTACTGGGATGAAAGAAATGTGTCACCATGCCCAACGTGATGCACATTGTTCACATGCTTCACCATGAAATCAGAAGCATTATTTTACTTTTCGAGAGCTATATGCCTGAGTCATCATATATGCTCAATAAACATTTGTGGGATTAGGGGAGGAATAACTACCATTTTTCACATTCAGAACATAAGTCTCTTCATATGCTCATATAAACCATTACGTGTGGCTTTCTCATATTGCTTTGTTGTATGCTAAAACAGGTGTAAGTAACCAGGAAGACTATTTTTAGATGGTTGTTGCTGCTGCCGTTGTTTAAGACAGAACTCTATTACGTAGTACAAGCTGATCTGGAGCTCACTCTAACCCAGGGTGATGTTGAAAACCAAGGAAATGCTCTTGCCTCAGTCTCCCTAGTGCTGAGATTATAGGCAGAAGCAAATATTCCTAGTTCCATTTGTGAGTATTATACCAGTCTTTCCCAGATCGCAGGAATGAGAGGGACGTGGAAATGTGGCCTCAGAAGCCTGTGCAGTGTTAACAAATGCTCCTGTAAGGATAATGGAAGGCAGCTTGCAACATAGCAATGAAATAATCTAGGAATTAAAATGCTCCCATTCAGAATGTACTTATTCCCCAAGAAATAGTAGCGTGTCAGCTCTTCAAGTAACATCCCAAACCTAAGGCAAACTCTTGACTCTGAGTTTCACTGCAAGCGTTTCTCTAATTGCGTGCACCTTGATCAGACTGAGGCAGGATGCGTTTGCCTAGCAGCAGGTGACTGTCCGTCTTTCACAATTCACTGAGCTGTTTGGCTACTTCTCCTCAGCTGTCATCTCAATGTAAGGAAAAGCCTACACAAGCAATGCTGTTTATAGCAGTGGTGTAACTATCGTGTGAGGTTAAACACGTTGCAGCACCAAGAGAATAGACTTTAAGCCAAGCTGGCAAGAACTCACTGTGGTAGGGACACGCCTCATAGCCAGGCCAAAGAACACCGCAGGATGTTTAGGAACAGCCCTCAACAGGCTCCAGGAGTTTTTCACAGAGTTCACTCTCTGCCGAGGTTCTGTGACTCTCAACCCAGTGTGAACCTATATTTGTAAGGAATCTTCACTGTTCAGTTCCAATAGCTCAGTGACACTTGCAGTTGGAATCAATTTCCAGGCTGAAATAATCAATACTTCTGTTCTACTATAAAACTAAAAAAATTACTCTCTTGTGACCAGATGCTCTTGAGCCCCAGTATTTCATAGCTTCTCTCTGATTCTTTGAAATTCATGATCCTGTTTCTACCTGAGTCAATCAATGTCTAACACGGTTCAAATTCTTGGAAGAATTCGGTCTTATGCTCAGCTTAATGCTATACCCACTGCCACAATAGAGTTCAACAAATCACTCAGAGGCAGCAATGCATGGTAAAATATCCAGGCAAGGTCTAACCAAATGTGAGAATGCAAGTGATGAAGCCAAGGGAAAGACACAGTCATCTCTGTTTCCTACATCAGATGGTACCCAATACCAGCCAATTTAAATCAAGTTGCAGGCATAGAAAGCATACTCTATCTTTTTTATCCACACATATACCCAAATAAACATAGTACCAGACAGGATGTATNTCATTATTATAGATGTATGCTTATAAAGGTTTCTGATGCTTAAAGGAAGAAAGAAGGCTTTTAGCAGAGATTACATGACAGACCTGTACAACAATGTAGCCTTGATTTAAAACAGTGAATAGTTCCTGGGATCTGAACATAGTGGGATAAAAGCAGCGTGTTTTAGGGAAAGAATATAGAGGGAGAAAATTCACAGAGATAGACAGTCTTGTGAGAAAGACACGTGGTAGCAGTATGATCAGATACAGAGAGCATGGTGATCTCAGCTGTCGTTTAACACCGTGTTCTCACTGGGGCTGAATAGAAGAGGGAGGACTGAAGGTAAAGAGCAACTTGAAAGCCTCTTCCATGACAGCGCCCATCCTAGATTCAGCTGAGTGCACTGTGATAGCAAACATCACACACACTCCACATTGCAGACTTGGGTGACTGCAGTAGCAGCAGCATCCCCTAGATGTCCAGTACCTATGGCATTGGATGTTTTCTAGGTAGAAATCATGCCCACCCTTTCTATGTTTTCATTACCAAATGGACCATGGACTCACACTTCTTCTCTTTTTTGAATCCCTTAACATTTTGACATTTTCTTTATTCCTAGTGTTAGCAATAGTGTGTGTGGGGTGGGGTGGGGTGGGGGGGTGGGTGTGTGTGATTTGTTTACATCAGTGCAGGAATTTATGTGCTATGGTACATGTCCGGAGGTCAGAGGAAAACTTCTGGGAGTTCGTTCTCTCCTTTCAAGTTGTTGAGGCACGGGTTTTCTTCTTTCTGTCATGCTCATGCTCTAGGCTAGTTGTCCCAGGGAATTCTGAGCAGTTCTCCGGCTGCCACCTCCCATCTAACTGCTGGACTGCTACGTTTTTTCACTTGGGTTCTAAGAATCAAACTCAGGTTGAAAAACTTAGAAAGCAAACACTTTCGCTTACTTAGCCAGCTCTGCAGCATCCTGTTAAATTCTCATAATTCTTCACAGTACACACTGATTCTCATTATACACAAGTGTACATATCATTGCTTCGCACAAAACCCTCTGTGCCAAAGAAACGCCCATTCTCTTCAACAAGTATCTCAAAGCGCCTCGGTCACCGAAGTCCTTAATGACTAATATCGGCCCCCGTCTACCTCACTCTATTCGAGTACGTATTAGCTGAGCAGGCCAAGGTCTTTTCCTGCCCTAGACCTTTCAGACACTATCATCTTCCTTCAAGTTTCAGATCTTCACCAAGACAAATGCACATGACCCAATGAGGTTGAGTTGATCACCAAAAGCTCAGCTGCACCTCGTTATTCTGTCCTCTCGTCTTTAAAACTATCTACAATATTCACTATAGTGTTTACTCTCCAGTTTTTCCCAAAACGTAAGCTGTCTGAGAATTGACACATACAGCTTATATCCACCCCTTCCACCAGTGTCAGAAGCCACATGAAGGGACAGGTATATGTCTCAAAAGCTTACGCACAGGAACGAGTAGTTGAAGATAAACAGAACTGCCATGTGTAAATCAAGTAAAGTCTAAGGAGGTCTGGTTATCGTTAACACCTCTCTCACTTCATCTCCAAAGCATAAAATATAGGGCAAAGGTAAATGAGGGAAACAACAAGGGAATGGGGTTAAAGAGGGCCTGAGTTCAATTCCCAGCAACCACATGATGCCTCACTAAATAATGATGCAAAATTCAAACTATAAATTATATATTAATGCCCTTCAGAAAGGTTATGCGTGTGTTCCAAAACAGTAGAATTCTAGATGATTATGAAACAGTAGAACGTGGCTTCAAGAACCAACCCAGGGTCATGCTTCCTCTGAAGTAGTCAAGAAGGATCAGCTGTCTGGATTGCTCAGGTATCATATAGAGGGAGAGATGATTCAGAGGGAGCTGCCGGCACATCGCTGTCGTTTGCATATGCACTAAGGTTCAAGTTTTAAGTGTTAAGTTTCAAGTTATAATGTTACATGGAGAACAAAGTGTTTGCACTTTAAAAGAAGAATCTTCATCATCACAACTGAGTAAGTTAACCAAACAGAATTAAACGAAAATAAATCTGTAGTCTGTTTTCTCAGATCAGACCGTGATGAGGGCTCGGAGACTAAGTACCTGTTTACTTCCATAGAACCTGGCTTTGGTACCTAGCACCTATGTGGCTCACAACTGTCTGTAAATCAAGTTCCAGGGATGCCCTCTTCTGGCTTCTGTGGATGCTGCACATACCTGATACATAAACATACAGTCAGGCAGGCAGTCGTATACACAAAATAAAAATTAATCCTAACATTAAAAAATAATGGAGTGAGGAGAGTAATGGAGATGGCTCAGTCTGGAAACCATTTTCTATAACAGCATAAGAACCTGATTCTAGAACTCCAGCACCCGGAGAAAGATAGAGGTGCAGCAACATGCGTTTGTGACCCCAGTAGGAGAGAGGATGGAAACTGGAAGATCCGTGGAGCTCACTGGCAAGAACCTTAGGCTACCGGTGAGCTCCGGGTTCAGTGAGAGCACTTGTGTGAGGAATGTACAACTGAGTATAAGGGCAAGACCAACATGGACCTTCAGCTTCCAAATCCACACACACACACACACACACAGACTTACAACCCATAAACACACAGAAATGCATGCATGCATGCGTACAAACATACACATGCATGCATGCATACATACATACATATGCCACACACACCCAAAAGCAAACAACACACACACAATAAAAAAGCAATAGTATTAACAACAAAAACACTTCAGTCTTAGCACTGTTTATTTCGCCAACGCATCAGTACATATCCCTGGCTGGCCTGGGTATCTGTATGCCATCAAGACTGACCTCAAACTCACAGAGATTTGCCTCTGCCTCCCTATTGTGGGAGCACAGTGAGCCCAGGATTTTCAAACGTCTCTAAGTTACTACGATTTTCTTCGCTTTATGTATAACAAAATCTCAGGATGAGGTTTAAGGCAAGTGGTTCTAGTATTCCTTCCATGATATAGTATCCCTTCCATCGCCTGGGTCACAGGACCAGAATTTAGCATTTCAGGCTCTGCAGAAAGGACCTTTGCTCTTGGTGCCCTAACTCCAGGCATCCTAGTGTGACATTCGCTATGTAGCCCAGGCTGTGCCTGTCTCTCAGTAATTTTCCGCCCTCAGCTTTCCACTTCCTGATTTACAAGGGTGCACCACCACTCCTGACTGTGATTCTATTGTTTTTCTGGAGTTTCAAGGAAAAAAAAATGAGAATCTTAGTTTAAAATCATGGTGCACTCTGTAAAGGGATAACATTCTGCAGGGGAAAAAATGATGACGGCTACATTATTTCAACGTTTGCTTCCTTCTTCGATAACAG
Seq C2 exon
TTTCTGATGGAGCCCTCGCCTCTTGAGCTACCAGTTGATGCAGTGCGGCGCATCGCGACTGAACTCAATTGTGACCCAACCGATGAGAGGGTGGCTCTCCGCTTGGATGAGGAAGATAAACTGAAGCGTTTTAAGGACTGTTTTTATATCCCCAAAATGCGGGACCTGCCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029993:ENSRNOT00000043533:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.041
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]