GgaALTD1007718-1/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000008380 | DGKZ
Description
diacylglycerol kinase zeta [Source:RefSeq peptide;Acc:NP_001026363]
Coordinates
chr5:22970449-22971038:-
Coord C1 exon
chr5:22970772-22971038
Coord A exon
NA
Coord C2 exon
chr5:22970449-22970557
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCTGTATGT
5' ss Score
5.1
3' ss Seq
GGCCCTCCCGTGTTTTCCAGGAA
3' ss Score
10.83
Exon sequences
Seq C1 exon
GCTGCTGACACGAGGCCCTCGCTGCCTGCGCCGCACCTTCTCCCACCGCCTGCCCACCGATGTCGGCTGCAGTCGGGCTCCCCACGGCCTGCCGGGCCGCTACCGTCGCCTCAGCCAGCGCCGCCGCTCCAGCGATGTCCTCTGGCCCGGGCTGCTGGCCACCACTCGCACACGGTGGCTGGCCCAGCAGTGCGCAGGGGCCGCCTTCCCCGAGTGCTTGGGACCAGAACCAGCCTGCTGCCCCGACGGCTGGAGCCCCAGGCTGCT
Seq A exon
NA
Seq C2 exon
GAAAGCTATTGCCAAGTCCAGCCTCCAGCACATGGTAGCCCAGCCAAACCCCGTGCCAGCCCTGAGGAGTGAGTCAGAGAGGCAGATACGCAGCACTGTGGACTGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-8-6,9-6,10-6-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.351
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCCCCGAGTGCTTG
R:
TGGAGGCTGGACTTGGCAATA
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]