RnoALTD0008882-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80855296-80855994:-
Coord C1 exon
chr3:80855755-80855994
Coord A exon
chr3:80855702-80855754
Coord C2 exon
chr3:80855296-80855404
Length
53 bp
Sequences
Splice sites
5' ss Seq
TATGTAGGT
5' ss Score
2.16
3' ss Seq
AGCTGTCCCCCTTTCTGTAGGAA
3' ss Score
9.75
Exon sequences
Seq C1 exon
GGCTCCTGGCCATTGCTTCCCATGCCTCGCTGCCTGCGCCGAGCCTCCTCATACCTGCTCCCTGCTGATGTGGAGTGTGGCCATACTCTTTGGGGCCTGCATGGCCACTATCGTCGCCTCAGCCAGCGGTGGCCCTCAGGCCAGCACCCTGGTCTTGGAGGCCGAAGCCCAAGAGTCTCGGGCGCTGCAGCAGGTCCCATGATCCCAGCCCGGGTGCGCCCGCTGTCTCGCAGACGCCAG
Seq A exon
GTAGCTCTAAGGCGGAAGTCAGCTGGACCCCAGCCCTGGAACACCCTGCTTAT
Seq C2 exon
GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCACCCCCTCCTCCCACGCCTGGGGCCCCGTGCGGTGAATCTGAGCGGCAGATCCGGAGTACTGTGGACTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737-14-5,15-5,16-5-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.743
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCAGGTCCCATGATC
R:
CTGCCGCTCAGATTCACCG
Band lengths:
141-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]