MmuALTD0004202-2/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91944761-91945257:-
Coord C1 exon
chr2:91945227-91945257
Coord A exon
chr2:91945174-91945226
Coord C2 exon
chr2:91944761-91944869
Length
53 bp
Sequences
Splice sites
5' ss Seq
TATGTAGGT
5' ss Score
2.16
3' ss Seq
AGCTGTCCTCCTTTCTGTAGGAA
3' ss Score
10.35
Exon sequences
Seq C1 exon
CCGTGTGCGCCCACTGTCTCGCAGACGCCAG
Seq A exon
GTAGCTCTAAGGCGGAAGTCAGCTGGACCCCAGCCCTGGAGCACCCTGCTTAT
Seq C2 exon
GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCACCCCCTCCTCCCACGCCCGGGGCCCCGTGCGGTGAATCTGAGGAGCAGATCCAGAGCACTGTGGACTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-10-18,11-18,12-18,13-18-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=NA C2=0.703
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCGCCCACTGTCTC
R:
AGTCCACAGTGCTCTGGATCT
Band lengths:
133-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types