GgaALTD1014199-3/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000017611 | METTL11A
Description
alpha N-terminal protein methyltransferase 1A [Source:RefSeq peptide;Acc:NP_001264618]
Coordinates
chr17:5644832-5645859:+
Coord C1 exon
chr17:5644832-5644906
Coord A exon
chr17:5644907-5644991
Coord C2 exon
chr17:5645371-5645859
Length
85 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
ATACCTGCTTTGCCCCCCAGGAC
3' ss Score
10.04
Exon sequences
Seq C1 exon
ACAGTGGACATGGTGGATGTGACCGAGGACTTCCTCACCAAGGCCAAGAGCTACCTGGGGGAGGAGGGCAGGCGG
Seq A exon
GTGCGCAACTACTTCTGCTGTGGCCTCCAGGACTTCAGCCCTGAGCCCAATTCCTATGACGTCATCTGGATCCAGTGGGTCATTG
Seq C2 exon
GACACCTCACTGACAACCACCTCTCTGACTTCCTGAAGCGGTGCCGTGCCGGCCTGCGACCCAATGGCATCGTGGTCATCAAGGACAACATGGCTCAGGAGGGCGTCATCATGGATGATGTGGACAGCAGCGTCTGCCGGGACCTGGATGTGGTCCGTAAGATCATCCGCCGGGCTGGGCTGCACCTCCTGGCCGAGGAGCGCCAGGAGAACTTCCCCGATGAGATCTACCATGTCTACACCTTCGCCATGAGATGAAGGTGCCCGGTGATGGGAGGAGGTCTCTCCAGGACCAGGACAGCGGTTCCTGCCGGGGCCAGGAGGGGTGAGGACTGTGCCTTCACCGCGGGGCTGCGCACGGCAGTGAGGGCGTTGTGACTCCGTCTGTCTGGGGCTGGTGGTGAGGACGGGGCTTCATCTTCCAAGTTGCTGCTGTTTGTGAAAAGAGGTGTTTGCCAAATACATTTTTCCTGCTGTTGGACTTCAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017611-13-7,14-7,15-7-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=FE(38.9=100),PF044449=Dioxygenase_N=WD(100=51.8)
A:
NA
C2:
PF058917=Methyltransf_PK=PD(38.9=97.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCCTCACCAAGGCCAAG
R:
GCTGCTGTCCACATCATCCAT
Band lengths:
179-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]