MmuALTD0008443-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000026857 | Mettl11a
Description
methyltransferase like 11A [Source:MGI Symbol;Acc:MGI:1913867]
Coordinates
chr2:30676061-30678553:+
Coord C1 exon
chr2:30676061-30676136
Coord A exon
chr2:30676137-30676221
Coord C2 exon
chr2:30677882-30678553
Length
85 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
CACGCCTCGCTTCTCCCCAGGCC
3' ss Score
9.28
Exon sequences
Seq C1 exon
GGTGGTCGACATGGTCGACGTGACGGAAGACTTTCTGGCCAAAGCCAAGACCTACCTGGGGGAAGAGGGCAAGAGG
Seq A exon
GTGAGGAACTACTTCTGCTGTGGGCTGCAGGACTTCAGCCCTGAGCCTGGCTCCTATGACGTGATCTGGATCCAGTGGGTGATAG
Seq C2 exon
GCCACCTGACGGATCAGCACCTGGCTGAGTTTCTGCGCCGCTGCAAGCGGGGCCTGCGCCCCAATGGCATCATCGTCATCAAGGACAACATGGCCCAGGAGGGTGTGATCCTGGACGATGTGGACAGCAGTGTGTGCCGGGACCTTGAGGTGGTCCGCCGGATCATCCGCACTGCAGGCCTCAGCCTCCTGGCCGAGGAGCGCCAGGAGAACCTGCCAGATGAGATCTACCATGTCTACAGCTTTGCCCTGAGATGAAGCCAGGGCCAGAGCTGGGGGCCAGCAGCTGGCAGGCCAAGAGACACACCATTGACTCCAGTGGGAAGGGTCAAGCCCTAGGGGAGGTGTGCCCTGGATTGGGGCACTGCAGCCCTGTCACTCTAAAGCACCCTGGCAACTTCCCACAGGGCTATGGAAAGCAGAGTTGGTCACCGCTGGTCTAGCTGCCTGAGGGGAAAGACTTCACTTGGTTGCCTAGGGACCTCAATGTGTGGACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026857-10-11,12-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=FE(38.9=100),PF044449=Dioxygenase_N=WD(100=51.8)
A:
NA
C2:
PF058917=Methyltransf_PK=PD(38.9=97.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACGGAAGACTTTCTGGCC
R:
TCCACATCGTCCAGGATCACA
Band lengths:
181-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: