HsaALTD0003883-3/3 @ hg19
Alternative 5'ss
Gene
ENSG00000148335 | METTL11A
Description
methyltransferase like 11A [Source:HGNC Symbol;Acc:23373]
Coordinates
chr9:132396402-132398209:+
Coord C1 exon
chr9:132396402-132396428
Coord A exon
chr9:132396429-132396585
Coord C2 exon
chr9:132397487-132398209
Length
157 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CTTGCCTCTGCCCTCCCCAGGCC
3' ss Score
10.95
Exon sequences
Seq C1 exon
CGGCTGCTCCTGCCGCTGTTCAGAGAG
Seq A exon
GTGGATATGGTCGACATAACGGAGGACTTCCTGGTTCAAGCCAAGACCTACCTGGGGGAGGAGGGCAAGAGGGTGAGGAACTACTTCTGTTGTGGGCTCCAGGACTTCACCCCGGAGCCGGACTCTTACGACGTGATCTGGATCCAGTGGGTGATAG
Seq C2 exon
GCCACCTCACCGATCAGCACCTGGCCGAGTTCCTGCGGCGCTGCAAGGGCAGCCTCCGCCCCAACGGCATCATCGTCATCAAAGACAACATGGCCCAGGAGGGCGTGATTCTGGACGACGTGGACAGCAGCGTGTGCCGGGACCTTGACGTGGTCCGCAGGATCATCTGCAGTGCAGGCCTCAGCCTCCTGGCCGAGGAGAGGCAGGAGAACCTCCCCGATGAGATCTACCATGTCTATAGCTTTGCCCTGAGATGAGCCGGGGCTGGCAGGAGAAACTGAGGAACCACAGTCCTGGTGGGGGGAGCTGGCAGCTGGGCAAGATCCAGGCGCCACGCTGGCGGTTCGTGAGTGTCGAGGCACCACTAAATATAGCTGTCTGCCGTCCACTCATTATGCGGGCTCTTCTTCAAAAGGCAAGGTGGGACCCGGCGGGGAGGGTGCTGCTGAACCAGCGGTGAGGCAGGAGCCCAGACCCTGCTCTCCTGCGAGATGGGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148335-8-11,9-11,10-11-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=FE(49.5=100)
A:
NA
C2:
PF058917=Methyltransf_PK=PD(38.9=97.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGCCGCTGTTCAGAGAG
R:
GGTAGATCTCATCGGGGAGGT
Band lengths:
252-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)