HsaALTD0003883-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000148335 | NTMT1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23373]
Coordinates
chr9:129634058-129635930:+
Coord C1 exon
chr9:129634058-129634149
Coord A exon
chr9:129634150-129634306
Coord C2 exon
chr9:129635208-129635930
Length
157 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CTTGCCTCTGCCCTCCCCAGGCC
3' ss Score
10.95
Exon sequences
Seq C1 exon
GCCCGAACAAGACAGGAACGTCCTGTGCCCTGGACTGTGGAGCTGGCATTGGGAGGATCACCAAGCGGCTGCTCCTGCCGCTGTTCAGAGAG
Seq A exon
GTGGATATGGTCGACATAACGGAGGACTTCCTGGTTCAAGCCAAGACCTACCTGGGGGAGGAGGGCAAGAGGGTGAGGAACTACTTCTGTTGTGGGCTCCAGGACTTCACCCCGGAGCCGGACTCTTACGACGTGATCTGGATCCAGTGGGTGATAG
Seq C2 exon
GCCACCTCACCGATCAGCACCTGGCCGAGTTCCTGCGGCGCTGCAAGGGCAGCCTCCGCCCCAACGGCATCATCGTCATCAAAGACAACATGGCCCAGGAGGGCGTGATTCTGGACGACGTGGACAGCAGCGTGTGCCGGGACCTTGACGTGGTCCGCAGGATCATCTGCAGTGCAGGCCTCAGCCTCCTGGCCGAGGAGAGGCAGGAGAACCTCCCCGATGAGATCTACCATGTCTATAGCTTTGCCCTGAGATGAGCCGGGGCTGGCAGGAGAAACTGAGGAACCACAGTCCTGGTGGGGGGAGCTGGCAGCTGGGCAAGATCCAGGCGCCACGCTGGCGGTTCGTGAGTGTCGAGGCACCACTAAATATAGCTGTCTGCCGTCCACTCATTATGCGGGCTCTTCTTCAAAAGGCAAGGTGGGACCCGGCGGGGAGGGTGCTGCTGAACCAGCGGTGAGGCAGGAGCCCAGACCCTGCTCTCCTGCGAGATGGGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148335-18-16,19-16,20-16-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=FE(49.5=100)
A:
NA
C2:
PF058917=Methyltransf_PK=PD(38.9=97.7)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGGGAGGATCACCAAGCG
R:
GTTCTCCTGCCTCTCCTCGG
Band lengths:
258-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development