GgaALTD1023115-2/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000003516 | TCIRG1
Description
V-type proton ATPase 116 kDa subunit a isoform 3 [Source:RefSeq peptide;Acc:NP_990053]
Coordinates
chr5:202373-203197:+
Coord C1 exon
chr5:202373-202473
Coord A exon
chr5:202474-202515
Coord C2 exon
chr5:203119-203197
Length
42 bp
Sequences
Splice sites
5' ss Seq
GATGTACGT
5' ss Score
6.45
3' ss Seq
TGTGCCCCCTCCCTCCCCAGCTG
3' ss Score
11.88
Exon sequences
Seq C1 exon
CATAGGGTGCCCCCATCCAGGCTGCCATGGGGTCCCTGTTCCGCAGCGAGGAGGTCTGCCTGGCGCAGCTCTTCCTGCACTCGGCCTCGGCGTACAGCTGC
Seq A exon
GTCAGTGAGCTGGGCGAGCGGGGGCTGCTGGAGTTCAGGGAT
Seq C2 exon
CTGAACCCCCACGTGAGCGCCTTCCAGCGGCGCTTTGTGGGCGAGGTGCGGCGCTGCGAGGAGATGGAGAAGACCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003516-1-0,2-0,3-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PU(1.6=33.3)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(3.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCCGCAGCGAGGAG
R:
AGGTCTTCTCCATCTCCTCGC
Band lengths:
142-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]