GgaEX0000085 @ galGal3
Exon Skipping
Gene
ENSGALG00000000156 | BRD2
Description
NA
Coordinates
chr16:80039-82645:-
Coord C1 exon
chr16:81009-82645
Coord A exon
chr16:80541-80637
Coord C2 exon
chr16:80039-80176
Length
97 bp
Sequences
Splice sites
3' ss Seq
GCCCTGAATGCGTTTTGCAGATT
3' ss Score
7.45
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
CATGCTGTAGTGCAGGCTGTCGTACCCCGAGGTGGTGAAACTGCTGGGCCCTGATGTCACCCCCTGCACTGCCTCTTTGTTTGCTCCAACCTTCCTTTTTTTGATTACTTTTTTTGCCTTTTTTTGAGCTGTTCTTGTGCACCTTGGTGGTGGAACGCTGGCCCCATCCCTGCTGATGTTGTCTTTTGCTCCCTTGCAGGATTCTGGGGGAGGGAAATGCCGGGCTTATGGGTTTGGCGACGGAATCGACCCCGGGCAAACGCATCCGCAAACCCTCGCTGCTTTACGAGGGCTTCGAGAGCCCCACCATGGCCTCGGTGCCGGCCCTACAGACCCCCCAGGCGAACCCCCCTCCGCCAGAGGTCTCGAACCCCAAAAAGCCCGGCCGGGTCACCAACCAGCTGCAGTACCTGCACAAAGTGGTGATGAAAGCCCTGTGGAAGCACCAGTTCGCTTGGCCTTTCCGTCAGCCTGTCGACGCCGTCAAGCTGGGTCTGCCG
Seq A exon
ATTCCCATCCATGAATTTGTAGAAGACATCTTGTGACCCCAATATTAAACGCCAGCCCCCTGTGTACCTGTGGCGCCCAAGGATTTAAAGCCCAGAG
Seq C2 exon
GATTACCACAAGATCATCAAGCAGCCCATGGACATGGGGACGATCAAACGGCGCTTGGAGAACAACTACTACTGGGGGGCAGCTGAGTGCATGCAGGACTTCAACACCATGTTCACAAACTGCTATATCTATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000156_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.371 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(31.8=26.7)
A:
NO
C2:
PF0043920=Bromodomain=FE(52.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAAGCCCTGTGGAAGCA
R:
TGAAGTCCTGCATGCACTCAG
Band lengths:
179-276
Functional annotations
There are 0 annotated functions for this event