BtaEX0005726 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011074 | BRD2
Description
Bos taurus bromodomain containing 2 (BRD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045866]
Coordinates
chr23:7241652-7242702:+
Coord C1 exon
chr23:7241652-7241955
Coord A exon
chr23:7242207-7242298
Coord C2 exon
chr23:7242565-7242702
Length
92 bp
Sequences
Splice sites
3' ss Seq
GCCCTGGCTCCATTTTACAGATT
3' ss Score
9.25
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GCTCCCTGGGGAGGGGAATGCAGGGTTACTGGGCCTGGGCCCAGAAGCAGCAGCGCCTGGGAAAAGGATTCGAAAGCCGTCTCTATTGTATGAGGGATTCGAGAGTCCCACAATGGCTTCAGTGCCGGCTTTGCAACTAACCCCTGCCAACCCACCACCTCCTGAGGTGTCCAATCCCAAAAAGCCAGGACGGGTTACCAACCAGTTGCAATATCTGCACAAGGTGGTGATGAAGGCTCTATGGAAACATCAGTTTGCATGGCCTTTCCGGCAACCTGTGGATGCCGTCAAACTGGGTTTGCCG
Seq A exon
ATTCCCACCCCAGGTTGGGAGAGGACCACGGTGGCCAAAATTCTTAGCTTCTTCCTTTCCCTCATGCAGCCCATGGATAGCCAGCCCCAGAG
Seq C2 exon
GATTATCACAAAATTATAAAGCAGCCTATGGATATGGGTACTATCAAGAGGAGACTTGAAAACAACTACTATTGGGCTGCCTCAGAGTGTATGCAGGATTTCAACACCATGTTCACCAACTGCTACATCTACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011074_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.422 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(31.8=26.5)
A:
NO
C2:
PF0043920=Bromodomain=FE(52.9=100)
Main Inclusion Isoform:
ENSBTAT00000014704fB1045
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACAAGGTGGTGATGAAGG
R:
ACTCTGAGGCAGCCCAATAGT
Band lengths:
177-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development