GgaEX1011182 @ galGal4
Exon Skipping
Gene
ENSGALG00000000156 | BRD2
Description
bromodomain-containing protein 2 [Source:RefSeq peptide;Acc:NP_001025845]
Coordinates
chr16:89695-90969:+
Coord C1 exon
chr16:89695-89999
Coord A exon
chr16:90371-90467
Coord C2 exon
chr16:90832-90969
Length
97 bp
Sequences
Splice sites
3' ss Seq
GCCCTGAATGCGTTTTGCAGATT
3' ss Score
7.45
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GCAGGATTCTGGGGGAGGGAAATGCCGGGCTTATGGGTTTGGCGACGGAATCGACCCCGGGCAAACGCATCCGCAAACCCTCGCTGCTTTACGAGGGCTTCGAGAGCCCCACCATGGCCTCGGTGCCGGCCCTACAGACCCCCCAGGCGAACCCCCCTCCGCCAGAGGTCTCGAACCCCAAAAAGCCCGGCCGGGTCACCAACCAGCTGCAGTACCTGCACAAAGTGGTGATGAAAGCCCTGTGGAAGCACCAGTTCGCTTGGCCTTTCCGTCAGCCTGTCGACGCCGTCAAGCTGGGTCTGCCG
Seq A exon
ATTCCCATCCATGAATTTGTAGAAGACATCTTGTGACCCCAATATTAAACGCCAGCCCCCTGTGTACCTGTGGCGCCCAAGGATTTAAAGCCCAGAG
Seq C2 exon
GATTACCACAAGATCATCAAGCAGCCCATGGACATGGGGACGATCAAACGGCGCTTGGAGAACAACTACTACTGGGGGGCAGCTGAGTGCATGCAGGACTTCAACACCATGTTCACAAACTGCTATATCTATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000156_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.398 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(31.8=42.2)
A:
NO
C2:
PF0043920=Bromodomain=FE(52.9=100)
Main Inclusion Isoform:
ENSGALT00000000212fB5474
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAAGCCCTGTGGAAGCA
R:
TGAAGTCCTGCATGCACTCAG
Band lengths:
179-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]