GgaEX0000276 @ galGal3
Exon Skipping
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:363905-365057:+
Coord C1 exon
chr28:363905-364021
Coord A exon
chr28:364273-364401
Coord C2 exon
chr28:364938-365057
Length
129 bp
Sequences
Splice sites
3' ss Seq
CAGCTGCTAATGTTTTGCAGACA
3' ss Score
6.13
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ACTTGGACGAATGTTCCACCAAGCAGCACAACTGCCAGTTCCTGTGTGTGAACGTTATTGGAGGATTCAACTGCAAATGCCCTCCAGGCTTCACTCAGCACCACTCATCCTGCATCG
Seq A exon
ACAATAATGAGTGCACGGCTCAGCCGTCTCTGTGTGGAGCCAAAGGGCAGTGTCTGAACACACCAGGCAGCTACAACTGTGAATGTCAGAAGGGATTCTCCCTGGACAGCTCTGGTGTTAACTGTGAAG
Seq C2 exon
ATGTGGATGAGTGTGACGGAAACCACCGGTGCCAGCATGGCTGCCAGAACGTGCTTGGAGGCTACAGATGTGGCTGTCCACAGGGCTATGTGCAGCACTACCAGTGGAATCAGTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACGAATGTTCCACCAAGC
R:
CCACACACTGATTCCACTGGT
Band lengths:
234-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]