BtaEX6038509 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18011866-18016553:-
Coord C1 exon
chr7:18016437-18016553
Coord A exon
chr7:18012076-18012204
Coord C2 exon
chr7:18011866-18011985
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTCTGTCCTCTGCAGACA
3' ss Score
11.99
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
ACCTGGATGAGTGCTCCTCCAGGCAGCACAACTGCCAGTTCTTCTGCGTCAACACCATCGGTGCCTTCACCTGCCGCTGTCCCCCTGGCTTCACCCAGCGCCACCAGGCCTGCTTTG
Seq A exon
ACAATGACGAGTGCTTGGCCCAGCCTGGCCCATGTGGTACCCGTGGGCGCTGCCACAATGCCCCAGGCAGCTTCAGCTGTGAGTGCTATCAAGGCTTCACCCTGGACAGCTCCGGTCATGGCTGCAAAG
Seq C2 exon
ACGTGGATGAATGCAATGGGCCTCATCGCTGCAAGCATGGCTGTCAGAACGAGCTGGGGGGCTATCGCTGCAGCTGCCCCCAGGGCTTCACCCCACATTCCCAGTGGAGCCAGTGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595-'61-68,'61-67,63-68=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
ENSBTAT00000035613fB2722
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGATGAGTGCTCCTCC
R:
CACACTGGCTCCACTGGGAAT
Band lengths:
234-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]