RnoEX6018892 @ rn6
Exon Skipping
Gene
ENSRNOG00000007302 | Fbn1
Description
fibrillin 1 [Source:RGD Symbol;Acc:620908]
Coordinates
chr3:117576941-117578343:-
Coord C1 exon
chr3:117578227-117578343
Coord A exon
chr3:117577829-117577957
Coord C2 exon
chr3:117576941-117577060
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTCCCACTGCTTCTCCCAGATA
3' ss Score
7.09
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
ATCTTGACGAGTGTGCAACCAAGCAGCATAACTGTCAGTTCCTGTGTGTTAACACCATCGGCGGCTTCACATGCAAATGCCCTCCTGGGTTCACCCAGCACCACACTGCCTGCATTG
Seq A exon
ATAACAATGAATGCACTTCTGAGATCAACCTGTGTGGGTCCAAGGGCGTTTGCCAGAATACACCAGGAAGCTTCACCTGTGAATGCCAGCGGGGATTCTCCCTCGATCAGAGTGGTGCCAGCTGTGAAG
Seq C2 exon
ATGTGGACGAGTGTGAGGGTAACCACCGCTGCCAACATGGCTGCCAGAACATCATTGGAGGCTATAGGTGCAGCTGCCCCCAGGGCTACCTCCAGCACTACCAGTGGAACCAGTGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007302-'71-72,'71-71,72-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGACGAGTGTGCAACCAA
R:
ACACACTGGTTCCACTGGTAGT
Band lengths:
234-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]