BtaEX6053891 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002278 | FBN1
Description
Bos taurus fibrillin 1 (FBN1), mRNA. [Source:RefSeq mRNA;Acc:NM_174053]
Coordinates
chr10:62127434-62129006:+
Coord C1 exon
chr10:62127434-62127550
Coord A exon
chr10:62127803-62127931
Coord C2 exon
chr10:62128887-62129006
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTCTGCTTCTTACAGATA
3' ss Score
11.05
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ATCTTGATGAGTGTGCAACTAAGCAGCACAACTGCCAGTTCCTGTGTGTTAACACCATTGGCAGCTTCACATGTAAATGTCCTCCTGGATTTACCCAACACCATACTGCCTGCATTG
Seq A exon
ATAACAATGAATGCACCTCTGACATCAACCTGTGTGGGTCAAAGGGCATTTGCCAGAACACTCCTGGAAGCTTCACTTGTGAATGCCAGCGGGGATTCTCACTTGATCCGAGCGGCGCAAGCTGTGAAG
Seq C2 exon
ATGTGGACGAGTGTGAGGGAAACCATCGCTGCCAGCACGGCTGCCAGAACATCATCGGCGGCTACAGGTGCAGCTGCCCCCAGGGCTATCTCCAGCACTACCAGTGGAACCAGTGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002278-'66-77,'66-76,67-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0)
A:
PF126622=cEGF=PU(83.3=45.5)
C2:
PF126622=cEGF=PD(12.5=7.3),PF146701=FXa_inhibition=PU(87.8=87.8),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGATGAGTGTGCAACTAAGCA
R:
CAACACACTGGTTCCACTGGT
Band lengths:
236-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]