GgaEX6007878 @ galGal3
Exon Skipping
Gene
ENSGALG00000004960 | FBN1
Description
NA
Coordinates
chr10:11682470-11684084:-
Coord C1 exon
chr10:11683968-11684084
Coord A exon
chr10:11683437-11683565
Coord C2 exon
chr10:11682470-11682650
Length
129 bp
Sequences
Splice sites
3' ss Seq
CAGACTTTGGTTTCCTTCAGATA
3' ss Score
8.41
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ATCTCGATGAATGTGCAACAAAGCAGCACAACTGTCAGTTCCTTTGTGTCAACACTATTGGGGGTTTTACTTGTAAATGTCCTCCTGGATTCACTCAGCACCATACAGCCTGCATTG
Seq A exon
ATAATAATGAATGTGCTACAGAAATTAATTTATGCGGGGCAAAAGGTATTTGCCAGAATACTCCGGGAAGTTTTGTGTGTGAATGTCAGCGTGGCTTCTCACTCGACCAGACTGGGCTTAGCTGTGAAG
Seq C2 exon
ATGTTGATGAATGTGATGGAAACCATCGATGTCAGCATGGCTGCCAAAACATAATCGGAGGATACAGGTGTAGCTGCCCACAAGGATATCTCCAGCATTACCAGTGGAACCAATGCGTTGGCAAGTCCCTTTTTATAGTTTATGTATGGAAATGCATGCAGCTACAAGTGAAGGGCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960-'66-72,'66-70,67-72=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=68.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCAACACTATTGGGGGT
R:
GCCCTTCACTTGTAGCTGCAT
Band lengths:
249-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]