GgaEX6007878 @ galGal4
Exon Skipping
Gene
ENSGALG00000004960 | FBN1
Description
fibrillin 1 [Source:HGNC Symbol;Acc:HGNC:3603]
Coordinates
chr10:9680138-9681691:-
Coord C1 exon
chr10:9681575-9681691
Coord A exon
chr10:9681044-9681172
Coord C2 exon
chr10:9680138-9680257
Length
129 bp
Sequences
Splice sites
3' ss Seq
CAGACTTTGGTTTCCTTCAGATA
3' ss Score
8.41
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ATCTCGATGAATGTGCAACAAAGCAGCACAACTGTCAGTTCCTTTGTGTCAACACTATTGGGGGTTTTACTTGTAAATGTCCTCCTGGATTCACTCAGCACCATACAGCCTGCATTG
Seq A exon
ATAATAATGAATGTGCTACAGAAATTAATTTATGCGGGGCAAAAGGTATTTGCCAGAATACTCCGGGAAGTTTTGTGTGTGAATGTCAGCGTGGCTTCTCACTCGACCAGACTGGGCTTAGCTGTGAAG
Seq C2 exon
ATGTTGATGAATGTGATGGAAACCATCGATGTCAGCATGGCTGCCAAAACATAATCGGAGGATACAGGTGTAGCTGCCCACAAGGATATCTCCAGCATTACCAGTGGAACCAATGCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960-'71-73,'71-71,72-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATGAATGTGCAACAAAGCA
R:
CAACGCATTGGTTCCACTGGT
Band lengths:
234-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]