MmuEX6104639 @ mm10
Exon Skipping
Gene
ENSMUSG00000027204 | Fbn1
Description
fibrillin 1 [Source:MGI Symbol;Acc:MGI:95489]
Coordinates
chr2:125308470-125309873:-
Coord C1 exon
chr2:125309757-125309873
Coord A exon
chr2:125309381-125309509
Coord C2 exon
chr2:125308470-125308589
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTCCCACTGCTTCTCCCAGATA
3' ss Score
7.09
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ATCTTGACGAGTGTGCAACCAAGCAGCATAACTGTCAGTTCCTGTGTGTTAACACCATCGGTGGCTTCACATGCAAATGCCCTCCTGGGTTTACCCAGCATCACACTGCCTGCATTG
Seq A exon
ATAACAATGAGTGCACGTCTGATATCAACCTGTGTGGGTCCAAGGGTGTTTGCCAGAACACTCCAGGAAGCTTCACCTGTGAATGCCAACGGGGGTTCTCACTCGATCAGAGTGGTGCCAGCTGTGAAG
Seq C2 exon
ATGTGGACGAGTGTGAGGGTAACCACCGCTGTCAACATGGCTGCCAGAACATCATCGGAGGCTATAGGTGTAGCTGCCCCCAGGGCTACCTCCAGCACTACCAATGGAACCAGTGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027204-'76-74,'76-73,77-74
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGACGAGTGTGCAACCAA
R:
ACACACTGGTTCCATTGGTAGTG
Band lengths:
234-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types