GgaEX0001203 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1186317-1190894:+
Coord C1 exon
chr18:1186317-1186544
Coord A exon
chr18:1189922-1190113
Coord C2 exon
chr18:1190703-1190894
Length
192 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTGCCTGTGTTGCAGGAT
3' ss Score
10.96
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AACATCCATCTGGTGGCCAAGTGGCTGAGCTCTCTGGAGAAGAAGCTGGAGCAGCACAGTGAGGGCAGCCATCGGGATTTCCGTGTCTTCATTAGCGCAGAGCCAGCTCCGTGCCCAGAGAGCCACATCATTCCGCAGGGCATCCTGGAGAGCTCCATCAAAATCACCAACGAGCCACCGACCGGGATGCACGCCAACTTGCACAAAGCCCTCGACAACTTCAACCAG
Seq A exon
GATACCCTGGAGATGTGCACTCGGGAGAACGAGTTCAAGAGCATCCTGTTTGCCCTCTGCTATTTCCATGCTGTGGTGGCAGAAAGGCGCAAGTTTGGTCCCCAGGGCTGGAACCGATCCTACCCCTTCAACACTGGAGACCTCACTATCTCTGTTAACGTGCTCTATAACTACCTAGAGGCCAGCTCAAAG
Seq C2 exon
GTCCCATATGATGATTTACGCTACCTCTTTGGTGAGATTATGTACGGAGGTCACATTACGGATGACTGGGACAGACGACTTTGCAAGACCTATTTGGAAGAATTTATTAAGCCAGAAATGCTGGAGGGAGAATTCTTCCTTGCTCCAGGATTCCCTCTCCCAGGGAACATGGACTATAATGGCTATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'60-67,'60-66,62-67
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.7=100)
A:
PF0302810=Dynein_heavy=FE(12.4=100)
C2:
PF0302810=Dynein_heavy=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAATCACCAACGAGCCACC
R:
AGTCCATGTTCCCTGGGAGAG
Band lengths:
245-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]