MmuEX6086238 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65849876-65855414:-
Coord C1 exon
chr11:65855187-65855414
Coord A exon
chr11:65851004-65851195
Coord C2 exon
chr11:65849876-65850067
Length
192 bp
Sequences
Splice sites
3' ss Seq
AAATGATGCTTCTCTTCCAGGAC
3' ss Score
8.51
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
AACATCCACCTGGTGGCCAAGTGGCTCAGTACCCTGGAGAAGAAACTGGAGGAGCTCAGCGAGGAAAGTCACCCAGACTTCAGGGTCTTCATCAGCGCAGAGCCTGCACCCTCCCCTGAGGGCCACATCATTCCCCAGGGCATTCTGGAAAACTCCATTAAGATCACCAATGAGCCTCCCACAGGCATGCACGCCAACTTACACAAAGCCCTGGACAACTTCACTCAG
Seq A exon
GACACTCTGGAGATGTGTTCCCGGGAGACAGAGTTCAAGACCATCCTCTTTGCTTTGTGCTACTTTCATGCGGTGGTTGCCGAGAGACGGAAGTTTGGGCCACAGGGCTGGAATCGGTCCTATCCATTTAACACTGGGGACCTCACCATCTCTGTGAATGTGCTATATAATTTCCTGGAGGCTAACACAAAG
Seq C2 exon
GTACCCTATGACGACTTGCGTTACCTGTTCGGTGAGATCATGTACGGTGGCCATATCACAGATGACTGGGACAGGAGACTCTGCAGAACCTATTTAGAGGAATTCATTCGGCCAGAGATGCTAGAAGGAGAGCTCTCCCTGGCCCCGGGGTTCCCACTCCCAGGAAACATGGACTACAGTGGCTATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'76-86,'76-84,78-86
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.7=100)
A:
PF0302810=Dynein_heavy=PD(1.1=3.1),PF0302810=Dynein_heavy=PU(14.2=98.5)
C2:
PF0302810=Dynein_heavy=FE(14.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCAGTACCCTGGAGAAG
R:
GCCACCGTACATGATCTCACC
Band lengths:
258-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types