RnoEX0028653 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52366235-52371309:-
Coord C1 exon
chr10:52371082-52371309
Coord A exon
chr10:52367333-52367524
Coord C2 exon
chr10:52366235-52366426
Length
192 bp
Sequences
Splice sites
3' ss Seq
TAATGATGCTTCTCTTCCAGGAC
3' ss Score
8.79
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
AACATCCACCTGGTGGCCAAATGGCTCAGTACCCTGGAGAAGAAACTGGAGGAGCTCAGCGAGGAAAGTCACCCAGACTTCAGGGTCTTCATCAGCGCCGAGCCTGCACCCTCCCCTGAGGGCCACATCATTCCCCAGGGCATTCTGGAAAACTCCATTAAGATCACCAACGAGCCCCCCACAGGCATGCATGCCAACTTACACAAAGCCCTGGACAATTTCACTCAG
Seq A exon
GACACTCTGGAGATGTGCTCCCGGGAGACAGAGTTCAAGACCATCCTCTTTGCTTTGTGTTACTTTCATGCCGTGGTTGCCGAAAGACGCAAGTTTGGGCCGCAGGGATGGAATCGTTCCTACCCCTTTAACACTGGGGACCTCACCATCTCTGTGAATGTGCTGTACAATTTCCTGGAGGCTAACACAAAG
Seq C2 exon
GTACCCTATGATGACTTGCGTTACCTGTTTGGTGAGATCATGTACGGTGGCCATATCACAGATGACTGGGACAGGAGACTCTGCAGAACCTATTTAGAGGAATTCATTAGGCCAGAAATGCTGGAAGGAGAGCTGTCCCTGGCCCCAGGGTTCCCACTCCCAGGCAACATGGACTACAGTGGCTATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'92-92,'92-91,96-92
Average complexity
C1
Mappability confidence:
82%=100=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.7=100)
A:
PF0302810=Dynein_heavy=FE(12.2=100)
C2:
PF0302810=Dynein_heavy=FE(12.2=100)
Main Skipping Isoform:
ENSRNOT00000005583fB4274
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCAGTACCCTGGAGAAG
R:
GCCACCGTACATGATCTCACC
Band lengths:
258-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]