GgaEX0001304 @ galGal3
Exon Skipping
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1738828-1767914:-
Coord C1 exon
chr18:1767756-1767914
Coord A exon
chr18:1748939-1748966
Coord C2 exon
chr18:1738828-1738930
Length
28 bp
Sequences
Splice sites
3' ss Seq
GCTCATTCTTGTTTTTGCAGACC
3' ss Score
9.12
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
AGACCTATTCAGGGCTGTTCTGCGTAGTTATAAACCCCTACAAGAACCTCCCGATTTACTCAGAAAACATCATTGAGATGTACAGAGGGAAGAAGCGCCACGAAATGCCACCACACATTTATGCCATATCTGAGTCTGCATACAGATGCATGCTGCAAG
Seq A exon
ACCGTGAGGACCAATCCATTCTCTGCAC
Seq C2 exon
AGGCGAATCTGGTGCCGGGAAGACTGAAAACACTAAGAAGGTTATTCAATACCTTGCTCACGTTGCTTCCTCCCACAAAGGAAGAAAGGACCATAATATTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.160 C2=0.320
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(7.9=98.1)
A:
PF0006316=Myosin_head=FE(1.4=100)
C2:
PF0006316=Myosin_head=FE(5.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCACCACACATTTATGCCA
R:
GGAAGCAACGTGAGCAAGGTA
Band lengths:
124-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]