HsaEX0040952 @ hg19
Exon Skipping
Gene
ENSG00000133026 | MYH10
Description
myosin, heavy chain 10, non-muscle [Source:HGNC Symbol;Acc:7568]
Coordinates
chr17:8480554-8508300:-
Coord C1 exon
chr17:8508144-8508300
Coord A exon
chr17:8492399-8492426
Coord C2 exon
chr17:8480554-8480656
Length
28 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTCTGTTTTATAGATC
3' ss Score
10.88
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
ACTTATTCTGGACTCTTCTGTGTAGTTATAAACCCTTACAAGAATCTTCCAATTTACTCTGAGAATATTATTGAAATGTACAGAGGGAAGAAGCGTCATGAGATGCCTCCACACATCTATGCTATATCTGAATCTGCTTACAGATGCATGCTTCAAG
Seq A exon
ATCGTGAGGACCAGTCAATTCTTTGCAC
Seq C2 exon
GGGTGAGTCAGGTGCTGGGAAGACAGAAAATACAAAGAAAGTTATTCAGTACCTTGCCCATGTTGCTTCTTCACATAAAGGAAGAAAGGACCATAATATTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133026_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.100 C2=0.262
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(51.0=100)
A:
PF0006316=Myosin_head=FE(1.3=100)
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTCCACACATCTATGCT
R:
AGCAACATGGGCAAGGTACTG
Band lengths:
122-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)