BtaEX6087020 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021151 | MYH10
Description
Bos taurus myosin, heavy chain 10, non-muscle (MYH10), mRNA. [Source:RefSeq mRNA;Acc:NM_174834]
Coordinates
chr19:28756476-28780043:-
Coord C1 exon
chr19:28779887-28780043
Coord A exon
chr19:28768407-28768434
Coord C2 exon
chr19:28756476-28756578
Length
28 bp
Sequences
Splice sites
3' ss Seq
CTGTTTATTTTGTTTTCTAGATC
3' ss Score
11.43
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
ACCTATTCTGGACTCTTCTGTGTAGTCATAAATCCTTACAAGAACCTTCCAATTTACTCTGAGAATATTATTGAAATGTACAGAGGGAAGAAGCGTCACGAGATGCCTCCACACATCTACGCTATATCAGAATCTGCTTACAGATGCATGCTTCAAG
Seq A exon
ATCGTGAGGACCAGTCAATTCTTTGCAC
Seq C2 exon
GGGCGAATCAGGTGCCGGGAAGACAGAAAACACTAAGAAAGTCATTCAGTACCTTGCTCATGTTGCTTCTTCACACAAAGGACGAAAGGACCATAATATTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021151-'10-8,'10-6,11-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.100 C2=0.200
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
PF0006316=Myosin_head=FE(1.3=100)
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACAGAGGGAAGAAGCGTCA
R:
TGTTTTCTGTCTTCCCGGCAC
Band lengths:
113-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]