MmuEX6086428 @ mm10
Exon Skipping
Gene
ENSMUSG00000020900 | Myh10
Description
myosin, heavy polypeptide 10, non-muscle [Source:MGI Symbol;Acc:MGI:1930780]
Coordinates
chr11:68721320-68745419:+
Coord C1 exon
chr11:68721320-68721476
Coord A exon
chr11:68734388-68734415
Coord C2 exon
chr11:68745317-68745419
Length
28 bp
Sequences
Splice sites
3' ss Seq
TGTTTTATTTTGTTTTATAGATC
3' ss Score
10.68
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
ACTTACTCTGGACTCTTCTGTGTGGTGATAAATCCTTACAAGAACCTTCCAATTTACTCTGAGAATATTATTGAAATGTATAGAGGGAAGAAACGCCATGAGATGCCACCACACATCTACGCCATATCAGAGTCTGCTTACAGATGCATGCTTCAAG
Seq A exon
ATCGTGAGGACCAGTCAATTCTATGCAC
Seq C2 exon
GGGTGAATCGGGTGCCGGGAAGACAGAAAATACCAAGAAAGTCATTCAGTACCTTGCCCACGTTGCTTCTTCTCACAAAGGAAGAAAGGACCATAATATTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020900-'15-14,'15-12,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.150 C2=0.264
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(38.2=100)
A:
PF0006316=Myosin_head=FE(1.3=100)
C2:
PF0006316=Myosin_head=FE(25.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGAGATGCCACCACACAT
R:
CAACGTGGGCAAGGTACTGAA
Band lengths:
127-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types