GgaEX0002726 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:6873009-6874122:+
Coord C1 exon
chr7:6873009-6873044
Coord A exon
chr7:6873252-6873389
Coord C2 exon
chr7:6874027-6874122
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCATGTTCCTTCCCCTGCAGATT
3' ss Score
11.6
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
CTTCACCCAGGATGACAGCATTCCCCCCACAAGCAG
Seq A exon
ATTTCCCCTCAGGTCATCCAACTGGCAGAGGGAGAGTCTCTGTGCCTGTTGTCATTTGCATTATCCTGGGGGCTCTTCTCTGCCTGCTCCTGGCCCTCCTGGCTGGGCAGGTGCAAAGTGCCAAGGCCCAGCGCAGAG
Seq C2 exon
ACTCCAGGAGAAATGAGGAGTCCTTCCCCGAGGTTGTGTATGAGGAGATCAGATGCAGCTATGCATGGGAGAAGCAGACAATGTTTGTTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002213-'8-11,'8-10,9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=0.181 C2=0.167
Domain overlap (PFAM):
C1:
PF081316=Defensin_3=PD(0.1=0.0),PF118373=DUF3357=FE(15.0=100)
A:
PF118373=DUF3357=FE(67.6=100)
C2:
PF118373=DUF3357=PD(29.4=60.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACCCAGGATGACAGCAT
R:
TGAGTGAACAAACATTGTCTGCT
Band lengths:
131-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]