GgaEX0002949 @ galGal3
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
NA
Coordinates
chr14:15719677-15721349:-
Coord C1 exon
chr14:15721113-15721349
Coord A exon
chr14:15720682-15720785
Coord C2 exon
chr14:15719677-15719971
Length
104 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTTTAATTAACAGGGA
3' ss Score
9.3
5' ss Seq
AAGGTTTAC
5' ss Score
2.28
Exon sequences
Seq C1 exon
ATGAAATAAAGCAACCTGAGGAAGAGGGGAAGGAAAGCATGTCGAGTCAGCAGATCGCCTTGTGGCTGCAGGGGCTCTTCCTTTTTGCTTTGGTTTGGACGATTGGTGGGACCATTGATGCAGACAGCAGAAAGAAGTTTGATTTGTTTTACCGTAACTTGTTAATGGGGACAGATGATGGAAACCAACGCCCTAAGAATGTGAAGATTACCAGAAACAACATCTTCCCAGAAAAAG
Seq A exon
GGAATGTTTATGACTTCTATTTTTACAAGCGTGGAAGTGGGCAGTGGAACCTTTGGATGGATTACATCACACAGGATGAACAAGTTATCTCCCCAGGAGCGAAG
Seq C2 exon
GTGTCGGAGCTAATCATTCCAACAATGGAAACTGCCAGACAGATGTTCTTTCTGAAAACATATGTGGAACATAATATCCCTTTGCTTTTTGTGGGTCCCACTGGCACTGGAAAATCAGCTATAACAAACAGTTTTCTACTACAACTTCCCAAGCCAACATATATCCCAGTTTTCATCAACTTCTCTGCAAGAACCTCAGCTAACCAAACCCAGGACATTATCATGTCCAAGCTGGACAGAAGAAGAAAAGGATTATTTGGGCCTCCCTCAGGGAAAAGGGCTGTGATATTTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350-'49-49,'49-48,50-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(2.2=17.1)
C2:
PF127752=AAA_7=FE(36.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGACCATTGATGCAGAC
R:
ATTTTCCAGTGCCAGTGGGAC
Band lengths:
248-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]