MmuEX7004200 @ mm10
Exon Skipping
Gene
ENSMUSG00000052273 | Dnah3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:119978148-119993105:-
Coord C1 exon
chr7:119992860-119993105
Coord A exon
chr7:119981301-119981404
Coord C2 exon
chr7:119978148-119978442
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTCTATTTCTTTGGGTATAGGAA
3' ss Score
7.43
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATGAAATCCGGGACATCCAGGAGGAGGAAATGGAGATATATGAAGGTCTGTCAAGCCAGCAGATCTTCCTCTGGCTGCAAGGCCTGTTTCTTTTCTCCTTGGTGTGGACTTTGGCGGGTACCATCAATGCTGAGAGCAGAAAGAAATTTGATGTATTTTTCCGCAACCTGATCATGGGCATGGATGATCGTAACCCAAGGCCCAAGAGTGTGAAACTCACCAAAAACAACATCTTCCCAGAAAGAG
Seq A exon
GAAGCATCTATGATTTTTACTTCCTCAAACAAGGGGGTGGACACTGGAATGCATGGACAGAATATATCACCAAGGAGGAGGAGACTATTCCTGCGAATGCAAAG
Seq C2 exon
GTATCAGACCTCATCATTCCCACAATGGAGACTGCCCGGCAGTCCTTCTTCTTAAAAACCTACCTGGACCATGAGATCCCGATATTGTTCGTGGGTCCCACAGGCACTGGCAAATCAGCTATCACCAATGACTTCCTTCTCCACCTTCCCAAAAATGTCTACCAGCCCAACTTCATCAACTTCTCTGCCAGAACTTCAGCCAACCAGACCCAGGATATCATCATGTCCAAGCTGGACCGTCGGAGGAAAGGCCTTTTTGGGCCTCCCATAGGGAAGAAAGCAGTTGTGTTTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-'50-51,'50-50,51-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(2.2=17.1)
C2:
PF127752=AAA_7=FE(36.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTTGGTGTGGACTTTGGC
R:
GGACCCACGAACAATATCGGG
Band lengths:
250-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types