GgaEX0002949 @ galGal4
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:15003799-15005471:-
Coord C1 exon
chr14:15005235-15005471
Coord A exon
chr14:15004804-15004907
Coord C2 exon
chr14:15003799-15004093
Length
104 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTTTAATTAACAGGGA
3' ss Score
9.3
5' ss Seq
AAGGTTTAC
5' ss Score
2.28
Exon sequences
Seq C1 exon
ATGAAATAAAGCAACCTGAGGAAGAGGGGAAGGAAAGCATGTCGAGTCAGCAGATCGCCTTGTGGCTGCAGGGGCTCTTCCTTTTTGCTTTGGTTTGGACGATTGGTGGGACCATTGATGCAGACAGCAGAAAGAAGTTTGATTTGTTTTACCGTAACTTGTTAATGGGGACAGATGATGGAAACCAACGCCCTAAGAATGTGAAGATTACCAGAAACAACATCTTCCCAGAAAAAG
Seq A exon
GGAATGTTTATGACTTCTATTTTTACAAGCGTGGAAGTGGGCAGTGGAACCTTTGGATGGATTACATCACACAGGATGAACAAGTTATCTCCCCAGGAGCGAAG
Seq C2 exon
GTGTCGGAGCTAATCATTCCAACAATGGAAACTGCCAGACAGATGTTCTTTCTGAAAACATATGTGGAACATAATATCCCTTTGCTTTTTGTGGGTCCCACTGGCACTGGAAAATCAGCTATAACAAACAGTTTTCTACTACAACTTCCCAAGCCAACATATATCCCAGTTTTCATCAACTTCTCTGCAAGAACCTCAGCTAACCAAACCCAGGACATTATCATGTCCAAGCTGGACAGAAGAAGAAAAGGATTATTTGGGCCTCCCTCAGGGAAAAGGGCTGTGATATTTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350-'50-47,'50-46,51-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(2.2=17.1)
C2:
PF127752=AAA_7=FE(36.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGACCATTGATGCAGAC
R:
ATTTTCCAGTGCCAGTGGGAC
Band lengths:
248-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]