HsaEX6042669 @ hg19
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:2949]
Coordinates
chr16:21011546-21031191:-
Coord C1 exon
chr16:21030946-21031191
Coord A exon
chr16:21014426-21014529
Coord C2 exon
chr16:21011546-21011840
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTCTTTGGGTCCAGGAA
3' ss Score
8.39
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
ATGAAATCAGGGCAGTAGAAGAGGAGGAAATGGAATTAGGTGAAGGCCTGTCAAGTCAACAGATCTTTCTCTGGCTCCAAGGACTGTTTCTCTTTTCCTTGGTGTGGACCGTGGCTGGCACCATCAACGCAGACAGCAGAAAGAAATTTGATGTGTTTTTCCGCAACCTGATCATGGGCATGGATGATAACCACCCAAGGCCCAAAAGCGTCAAACTCACCAAAAACAACATCTTTCCAGAAAGAG
Seq A exon
GAAGCATCTATGATTTTTATTTTATCAAACAAGCTAGTGGACATTGGGAAACGTGGACACAGTATATCACCAAAGAGGAGGAAAAAGTTCCAGCTGGTGCAAAG
Seq C2 exon
GTCTCAGAACTCATCATCCCCACAATGGAGACAGCCCGGCAGTCCTTCTTCTTGAAAACCTACTTAGACCATGAGATTCCAATGCTGTTCGTGGGTCCCACAGGCACTGGCAAATCAGCCATCACCAACAACTTCCTTCTCCACCTTCCCAAAAATACGTACCTACCCAACTGCATCAATTTCTCTGCCAGAACCTCAGCCAATCAGACCCAGGATATCATCATGTCCAAGCTGGATCGACGACGGAAGGGCCTTTTCGGGCCTCCCATAGGGAAGAAAGCAGTGGTGTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-'45-47,'45-46,46-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(1.9=14.3)
C2:
PF127752=AAA_7=FE(36.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCCTTGGTGTGGACCGTG
R:
GACCCACGAACAGCATTGGAA
Band lengths:
251-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)