DreEX0003676 @ danRer10
Exon Skipping
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39589472-39591568:+
Coord C1 exon
chr24:39589472-39589699
Coord A exon
chr24:39590372-39590475
Coord C2 exon
chr24:39591274-39591568
Length
104 bp
Sequences
Splice sites
3' ss Seq
GTATTCCGTTCTCCACACAGGAA
3' ss Score
10.51
5' ss Seq
AAAGTTAGT
5' ss Score
4.24
Exon sequences
Seq C1 exon
ATGAGATTTTTCAGGAAGGAGCAGAGTCGATGACCAGTCAGCAGATGACCCTGTGGCTTCAGTCCCTGTTTCTCTTCGCTGTGGTGTGGAGTTTGGGGGGAACCGTCAATGGCAACAGCAGGAATAAGTTTGACACCTTCTACCGAAACCTCCTCATGGGCACAATCACTGATCACCCGCGCCCTATGAGCGTGAAGCTCACCAAAAACAATGGGTTCCCTGAGAGAG
Seq A exon
GAACCGTCTATGATTACTATTTCCATAAGCAGGGTCCTGGTCAGTGGAACAACTGGACAGAATCTATTGCTAAAGAGGACAGAGTCATACCTGCTGGTGCAAAA
Seq C2 exon
GTGTCTGATCTGATCATACCCACGGCAGAAACCTCACGGCAGCTCTTCTTCCTCAGAACATACCTGTCACATGAAGTGCCCGTACTAATAGTGGGACCCACAGGAACTGGCAAATCTGTGATCAATAACAACTTCTTGATGTCTCTGTCTAAAGAGCGCTACACACCCATTTGCATCAACTTCTCTGCTCGGACCTCTGCCAACCAGACCCAGGACATCATCATGTCCAAGCTGGACCGCCGGCGCAAGGGTGTGTTTGGCCCACCGGTTGGCAAGAAGTGCATTATCTATGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468-'34-36,'34-35,35-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(1.9=14.3)
C2:
PF127752=AAA_7=FE(36.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCATGGGCACAATCAC
R:
CAAATGGGTGTGTAGCGCTCT
Band lengths:
253-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]